Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQQQSNMQNKFLIDAEIGDDDVTLPNLPAIDVPIVESPVKQEVKAEEVVEAAPSTEPEQPKSGFFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEGQL--------LVADIGVDATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAP--RVKPLH--IDPNKS--PYVILMVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQI-------------WGERNDIAVVAQGHGADSASVIFDASESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQAVG----------LTGITITKLDGT-AKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETEK
5L3Q Chain:B ((332-637))-------------------------------------------------------------------------------------------SLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKL------ITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMK---


General information:
TITO was launched using:
RESULT:

Template: 5L3Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1247 -33949 -27.22 -126.68
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain B : 0.75

3D Compatibility (PKB) : -27.22
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.625

(partial model without unconserved sides chains):
PDB file : Tito_5L3Q.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5L3Q-query.scw
PDB file : Tito_Scwrl_5L3Q.pdb: