Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMERFDVERMIQMKIFVVGANGQIGRHLIKDLAPSSHEIFAGVRDVASQ--TLVKKENVSYVSFDLTWSVEKMTEAFKGIDVLIFAAGSQGKNLLQVDLDGAIKTVIAAENAHVSRYLMVSAVYADEPAKWPESMTDYYITKHYADEWLKRTNLDFVILQPVTLTNDEEVT-------S--IQLTKPNEKASKTITRSTVAAVLAALVEET-DISRTTLVLSEGSKELNTAFQEWAKEE
5F5N Chain:B ((1-220))----------NRTILVTGATGTQGGATVRALLARGRPVRALVRDPGTDAARALAAAGVSLVTGDLN-DQASLRAAMADVHGVFSVQTFMTPGGLGAELRQGRAVADAAAATGVRHVVYSSVGGADRA-----SGVPHFETKWTIERHLRSLGVPTTVLRPTFFMDNFAAWGPQAVDGTLVVRLPLKPQTRVQLIAAEDIGVFAATAFDDPDTYVGAALELAGDELTGPELAARFGE--


General information:
TITO was launched using:
RESULT:

Template: 5F5N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1075 -49423 -45.97 -237.61
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain B : 0.68

3D Compatibility (PKB) : -45.97
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.470

(partial model without unconserved sides chains):
PDB file : Tito_5F5N.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5F5N-query.scw
PDB file : Tito_Scwrl_5F5N.pdb: