Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMILEIMMKVKNIQSETAMKQHSESVVSNQFEPTCHSEHSSVSDVCSSSAFGLATRSSRARMKRASGFTLIEVMVVIVILGVLAALIVPNVMGRSEKAKIDTTQITLKGVAGALDQYKLDNGHFPTMQEGGLDALINQPA--TA-KNWMPGGYVKGGYPKDSWKNDIQYVVPGKDDHPFDLYSFGADGKEGGEGNDADIYYQP
3GN9 Chain:C ((5-110))--------------------------------------------------------------------------------------------NKEKADQQKAITDIVALENALDMYKLDNSVYPTTD-QGLEALVTKPSSPEPRNYRN-GGYIKR-LPKDPWGNEYQYMSPGDK-GTIDIFTLGADGQEGGEGAAADIGNWN


General information:
TITO was launched using:
RESULT:

Template: 3GN9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 405 21892 54.05 212.54
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain C : 0.64

3D Compatibility (PKB) : 54.05
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.590

(partial model without unconserved sides chains):
PDB file : Tito_3GN9.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3GN9-query.scw
PDB file : Tito_Scwrl_3GN9.pdb: