Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMATLNPRDVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHMGHVGMMHGIDLNPEASKHY------------------AKASNMMGLTAEMLGRMNGITREEQDAFGVESHRRAWAATQEGRFKNEIIGVEGHDANGFKILCDIDEVIRPDANLEAFKALKPVFDPKGGSVTAATSSALSDGASAMLLMSAERAQALGLKPRAVIRSMAVAGCDAAIMGYGPVPATQKALKRAGLSIADIQTVELNEAFAAQGLSVLKGLGLYDKQDIVNLNGGAIALGHPLGCSGARITTTLLNVMEQQDTQIGLATMCIGLGQGIATVIERV
5F0V Chain:A ((4-395))------KNCVIVSAVRTAIG-SFNGSLASTSAIDLGATVIKAAIERAKIDSQHVDEVIMGNVLQA-GLGQNPARQALLKSGLAETVCGFTVN-VCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYL----LDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVNVVTRKKTFVFSQ-DEFPKANSTAEALGALRPAFD-KAGTVTAGNASGINDGAAALVIMEESAALAAGLTPLARIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKNLG-FDSEK-VNVNGGAIALGHPIGASGARILVTLLHAMQARDKTLGLATLCIGGGQGIAMVIERL


General information:
TITO was launched using:
RESULT:

Template: 5F0V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2388 -81139 -33.98 -217.53
target 2D structure prediction score : 0.54
Monomeric hydrophicity matching model chain A : 0.81

3D Compatibility (PKB) : -33.98
2D Compatibility (Sec. Struct. Predict.) : 0.54
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.465

(partial model without unconserved sides chains):
PDB file : Tito_5F0V.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5F0V-query.scw
PDB file : Tito_Scwrl_5F0V.pdb: