Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNLLKVCTLLPCSLVIAACSVNSSSTPPTLSSSTPQVQKSSIEISCQDLQNPAYRQAVLNAINQIRQDSRQCGQQYFSAAKPLSWNNNLYQGANAHSKDMANNNFLGHVGSTGLDLRARLKKYHMLSKANGENVASGQKTLNEVLAKWIA--------------SPLHCSNIMNPRYTEYAIACASDQSAKQRSYWTQQFAGF
5JYS Chain:A ((158-282))--------------------------------------------------LSDFASSVLAEHNKKRALH--------KDTPALSWSDTLASYAQDYADNYDCSGTLTHSG-----------------GPYGENLALGYD-GPAAVDAWYNEISNYDFSNPGFSSNTGHFTQVVWKSTTQVGCGIKTCGG-AWGDYVICSYDP-


General information:
TITO was launched using:
RESULT:

Template: 5JYS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 400 -13158 -32.90 -118.54
target 2D structure prediction score : 0.55
Monomeric hydrophicity matching model chain A : 0.60

3D Compatibility (PKB) : -32.90
2D Compatibility (Sec. Struct. Predict.) : 0.55
1D Compatibility (Hydrophobicity) : 0.60
QMean score : 0.251

(partial model without unconserved sides chains):
PDB file : Tito_5JYS.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5JYS-query.scw
PDB file : Tito_Scwrl_5JYS.pdb: