Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPLGLLWLGLALLGALHAQAQDSTSDLIPAPPLSKVPLQQNFQDNQFQGKWYVVGLAGNAILREDKDPQKMYATIYELKEDKSYNVTSVLFRKKKCDYWIRTFVPGCQPGEFTLGNIKSYPGLTSYLVRVVSTNYNQHAMVFFKKVSQNREYFKITLYGRTKELTSELKENFIRFSKSLGLPENHIVFPVPIDQCIDG
3HWD Chain:A ((23-198))----------------------STSDLIPAPPLSKVPLQQNFQDNQFQGKWYVVGLAGNAILREDKDPQKMYATIYELKEDKSYNVTSVLFRKKKCDYWIRTFVPGSQPGEFTLGNIKSYPGLTSYLVRVVSTNYNQHAMVFFKAVSQNREYFAITLYGRTKELTSELKENFIRFSKSLGLPENHIVFPVPIDQCIDG


General information:
TITO was launched using:
RESULT:

Template: 3HWD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 806 -100009 -124.08 -568.23
target 2D structure prediction score : 0.52
Monomeric hydrophicity matching model chain A : 0.92

3D Compatibility (PKB) : -124.08
2D Compatibility (Sec. Struct. Predict.) : 0.52
1D Compatibility (Hydrophobicity) : 0.92
QMean score : 0.780

(partial model without unconserved sides chains):
PDB file : Tito_3HWD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3HWD-query.scw
PDB file : Tito_Scwrl_3HWD.pdb: