Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSSKVSGFQDKNGKVLKIMIEWWKEKFRRVVVTQNVESLLVSIVISAYNEEKYLPGLIEDLKNQTYPKEDIEILFINAMSTDGTTAIIQQFIKEDTEFNSIRLYNNPKKNQASGFNLGVKHSVGDLILKIDAHSKVTESFVMNNVAIIQQGEFVCGGPRPTIVEGKGKWAETLHLVEENMFGSSIANYRNSSEDRYVSSIFHGMYKREVFQKVGLVNEQLGRTEDNDIHYRIREHGYKIRYSPSILSYQYIRPTFKKMLHQKYSNGLWIGLTSHVQFKCLSLFHYVPCLFVLSLVFSLALLPITFVFITLLLGAYFLLLSLLTLLTLLKHKNGFLIVMPFLLFSIHFAYGLGTIVGLIRGFKWKKEYKGTIIYLDKISQINKNML
2Z87 Chain:A ((375-468))---------------------------------------LVSIYIPAYNCSKYIVRCVESALNQTIT--DLEVCICDDGSTDDTLRILQEHY---ANHPRVRFISQKNKGIGSASNTAVRLCRGFYIGQLDSDD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 2Z87.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 425 -63159 -148.61 -701.76
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.52

3D Compatibility (PKB) : -148.61
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.52
QMean score : 0.527

(partial model without unconserved sides chains):
PDB file : Tito_2Z87.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2Z87-query.scw
PDB file : Tito_Scwrl_2Z87.pdb: