Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAQQRRGGFKRRKKVDYIAANKIEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIKRARVMALMPFVNED
4JYA Chain:R ((15-66))--------------------------DYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEK-


General information:
TITO was launched using:
RESULT:

Template: 4JYA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain R - contact count / total energy / energy per contact / energy per residue : 138 -12421 -90.01 -238.87
target 2D structure prediction score : 0.75
Monomeric hydrophicity matching model chain R : 0.80

3D Compatibility (PKB) : -90.01
2D Compatibility (Sec. Struct. Predict.) : 0.75
1D Compatibility (Hydrophobicity) : 0.80
QMean score : 0.581

(partial model without unconserved sides chains):
PDB file : Tito_4JYA.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4JYA-query.scw
PDB file : Tito_Scwrl_4JYA.pdb: