Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIQFDQVSLRRGGRVLFQKASMQL-HPGWKIGLTGVNGAGKSTLFAALLGSLGADEGSLTRPSVWTVAHMAQEVKALDMPAIDFVLSGDEEYWD-IQNKLAQP---EQLTD-------SDLAKLHGRFDEIHGYSAPSKAAQLMAGLGFLEHQLRLNVASFSGGWRMRLNLARTLMSRSDLLLLDEPTNHLDLDAILWLEDWLK--AYEGTLILI-SHDRDFLDAITDHILHIENQELTLYTGNYSTFETTRSERLAQQQQAFEKQQEARAHLQKFIDRF-KAKATKARQAQSRIKQLERMQQLAPAHVDTPFTFSFREPTKMSSPLLTLENASIGYGDKKIAEKIKLQITPNS-----RIGLLGMNGAGKSTLIKSLVG-DLPLLAGERKASELLNIGYFAQHQMDALDGQASPMLQLARIADKQISEATLRS-FLGSFGFSGERMDTPCESFSGGERARLALALIVWQRPNVLILDEPTNHLDLDMRHALSMALQDF----EGAVVLVSHERQLIASVCDELLLVHGGKCTEFEGDLQDYAKWLREARQQQINAQTAVAQNNSSSAAPAPAKVDKEAQRKEAARRREQTRPIRKNIEKVESQIEKLQPRLAEIEEALADTSLYEANRKDDLLKLMNEQTELKAKLEQYEEQLLELMMELEEMEASFEN
5LW7 Chain:B ((78-533))--QLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQL--------------IPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQL-------SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSD-VIHVVYGEPGVYG-------------------IFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSE-------RVDVE-----RE-TLVEYPRLVKDYGSF-----------KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDLTVAYKPQYIKAEYEGTVYELL--SKIDSSKLNSNFYKTELLKPLGII-DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG---------------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 5LW7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 2047 38702 18.91 90.21
target 2D structure prediction score : 0.49
Monomeric hydrophicity matching model chain B : 0.70

3D Compatibility (PKB) : 18.91
2D Compatibility (Sec. Struct. Predict.) : 0.49
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.358

(partial model without unconserved sides chains):
PDB file : Tito_5LW7.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5LW7-query.scw
PDB file : Tito_Scwrl_5LW7.pdb: