Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMISSAKKREVATRPDALPRTSVTEIFVELCLLFKIGEGGNKMAKQKIRIRLKAYEHRILDQSADKIVETAKRTGASVSGPIPLPTERSLYTIIRATHKYKDSREQFEMRTHKRLIDIVNPTPKTVDALMKLDLPSGVNIEIKL
5NO2 Chain:J ((1-99))--------------------------------------------QRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL


General information:
TITO was launched using:
RESULT:

Template: 5NO2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain J - contact count / total energy / energy per contact / energy per residue : 333 -37048 -111.26 -374.22
target 2D structure prediction score : 0.52
Monomeric hydrophicity matching model chain J : 0.79

3D Compatibility (PKB) : -111.26
2D Compatibility (Sec. Struct. Predict.) : 0.52
1D Compatibility (Hydrophobicity) : 0.79
QMean score : 0.386

(partial model without unconserved sides chains):
PDB file : Tito_5NO2.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5NO2-query.scw
PDB file : Tito_Scwrl_5NO2.pdb: