Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQLTLVRHGEAAPPVNGNDIKRPLTARGHAQAEQTATFLKDI-VKPNIFVVSPLLRAQETLAHIQTYFK-DVPVLLCDKIKPDDDAKEAIEWLSQIPYE---SIVVVCHMNVVGHIAELLTHETFNPFALAEARIYDQAVIANGLSTQKNSFIPTI--
1UJC Chain:A ((1-156))MQVFIMRHGDAALD-AASDSVRPLTTNGCDESRLMANWLKGQKVEIERVLVSPFLRAEQTLEEVGDCLNLPSSAEVLPELTPCGDVGLVSAYLQALTNEGVASVLVISHLPLVGYLVAELCPGE-TPPMFTTSAIASVTLDESGNGTFNWQMSPCNLK


General information:
TITO was launched using:
RESULT:

Template: 1UJC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 805 -15073 -18.72 -101.16
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : -18.72
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.466

(partial model without unconserved sides chains):
PDB file : Tito_1UJC.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1UJC-query.scw
PDB file : Tito_Scwrl_1UJC.pdb: