Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--MFISFEGTEGVGKTTLIRKIHQHFEEQG-KQVVLTREPGGTPLAEQIRSMLLAVNH--DENMSHDTELLLIYAARAQHLQQVILPALESNKIVLSDRFTDASFAYQCSGRGLSQDKLQLLNQNFVSRM----PEVTFWLDAPIELGMNRARERGALDRFEQEKLSFFTKVREGYETLWKAEPERIKRLDATQSPDQVFEQALQYLA-------
4TMK Chain:A ((2-211))RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRG---IDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLELAAQD-KSIHTIDAT-QPLEAVMDAIRTTVTHWVKEL


General information:
TITO was launched using:
RESULT:

Template: 4TMK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 886 25794 29.11 132.96
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain A : 0.77

3D Compatibility (PKB) : 29.11
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.77
QMean score : 0.518

(partial model without unconserved sides chains):
PDB file : Tito_4TMK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4TMK-query.scw
PDB file : Tito_Scwrl_4TMK.pdb: