Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MKAVAYQKAGPITLPEALVD-IELDTPVAKGHDLLIRVQAVSVNPVDTKIRKNVSA-EQSGWKVLGWDAVGTVEAIGDKVTQFKIGDVVWYAGALNRQGSNSELQLVDERIVGHKPKTLEATEAAALPLTAITAWEMLFDRLQVPKTAPANTTILVIGGAGGVGSITIQLLKQLTNLTIIATASRPETKEWVEQLGADYVLDHRQ-SLAAQIKLLG-LSAPLYVFSTTETDQHLSDIVELIAPQGHFGLIDDPDQLDI--KPFKSKSVSVHWEFMFTRSMFQTEDMEKQSALLNEVSKLVDEGKIKTTVTQVLSPINAENLTRVHEQIESGS-TKGKIVLHGF 1YB5 Chain:A ((30-351)) MRAVRVFEFGGP---EVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSST--ISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVK---A-GESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLAN-VNLSKDLSLLSHGGRVIVVGSRGTIEINPRDTMAKESSIIGVTLF-----S-STKEEFQQYAAALQAGMEIGWLKPVIGSQY-PL--EKVAEAHENIIHGSGATGKMILLL-

General information: TITO was launched using: RESULT: Template: 1YB5.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1874 12368 6.60 39.26 target 2D structure prediction score : 0.63 Monomeric hydrophicity matching model chain A : 0.74 3D Compatibility (PKB) : 6.60 2D Compatibility (Sec. Struct. Predict.) : 0.63 1D Compatibility (Hydrophobicity) : 0.74 QMean score : 0.526

(partial model without unconserved sides chains): PDB file : Tito_1YB5.pdb: (Unconserved sides chains are recalculated) : Sequence: align-1YB5-query.scw PDB file : Tito_Scwrl_1YB5.pdb: