Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKTKLPTEWQELS-DQLGFQEFTPIQTQLFEPLLAGENLLGVSQTGTGKTLAYLLPSLLRLQKK-------KAQQLLILAPNTELAGQIFDVCKTWAEA-IGLTAQLFLSGSSQKRQIERLKKGPEILIGTPGRIFELIKLK---KIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATTKFDQEKIV----PNTRTIDLSDQ--KLDNIQHFYMQVD-QRHRVDMLRKL-------------AHVEDFRGLVFFNSLSDLGNAEEKLQYRDILAVSLASDVNVKFRKIILEKFKDNQLTLLLATDLLARGIDIDSLECVVNFDIPRDSETYTHRAGRTGRMGKEGYVITLVTHPEEIKKLKKFASIREIVLKNQELYIK
4LJY Chain:A ((56-428))---GLSTDTMVLITEKLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATFPNKLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDEVQS----DAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKREKNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLLLHDE------------------------


General information:
TITO was launched using:
RESULT:

Template: 4LJY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1532 23319 15.22 70.88
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain A : 0.74

3D Compatibility (PKB) : 15.22
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.74
QMean score : 0.564

(partial model without unconserved sides chains):
PDB file : Tito_4LJY.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4LJY-query.scw
PDB file : Tito_Scwrl_4LJY.pdb: