Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMITVSRKKRGSKKMKTYTFPENFWWGSAASGPQTEGRVSDDGKGENIWDHWYELEPEKFFDQVGPEKTSQVYTKYKEDVQLMKETGHNTFRTSIQWSHLIPEGTGEINQKAVSFYRDYFTELLDNGIEPFVNLYHFDMPLPLQEKGGWLSRETVDAYVSYAAACFELFGDLVKKWFTHNEPIVPVEGGYLYQFHYPNHINMKEAVQVGYHENLASAKVIKAYHEGGHDGEIGIILNLTPSYPRDETNPEDVKAAKIADAFFNRSFLDPAVKGEFPQELIEIVKELAIMPEIHEGDLELIRENTIDLLGINYYQPRRIKAKETPINHEHSPMPDDYFDNYDMPNKK---MNPYRGWEIYEKGIYDILTNTRENYGN-IKCYISENGMGVEGEERFVNSEGIIEDDYRIEFVTDHLKYVHQAIQEGTNCVGYHMWTCMDNWSWTNAYKNRYGFIAVDLAQDGKRTIKKSGRWFKTVSEKNGFDA
5GNZ Chain:I ((10-453))--------------RSYRFPEGFLWGAATAAYQIEGSSMADGAGESIWDR-FSHTPGNMKDGDTGDVACDHYNRWREDIELMKRLNLQAYRFSVSWSRVIPQGRGAINPKGLAFYDRLVDGLLEAGIEPLATLYHWDLPAALDDRGGWLNPDIADWFADYGQVLFEKFKGRVKTWGTINEPWCIVDGGYLHGALAPGHRSAYEAVIAGHNVLRAHGAAVRRFREVG-EGQIGIVLNIEPKYPASD-KPEDEAARRRAEAQMNRWFLDPLMGRGYPEELTDVYG--AAWREFPKEDFELIAEPT-DWMGLNWY------TRAVP---ENAP---DAWPTRSRPVRQTQHAHTETGWEVYPPALTDTLVWLSEQTGGKLPLMVTENGSAWYDPPHAI--DGRIHDPMRVHYLQTHIKALHDAIGKGVDLRGYMVWSLLDNLEWSLGYSKRFGIVHVNFATQ-ERTIKDSGLFYAEVIKTHG---


General information:
TITO was launched using:
RESULT:

Template: 5GNZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain I - contact count / total energy / energy per contact / energy per residue : 2635 -123909 -47.02 -281.61
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain I : 0.78

3D Compatibility (PKB) : -47.02
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.453

(partial model without unconserved sides chains):
PDB file : Tito_5GNZ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5GNZ-query.scw
PDB file : Tito_Scwrl_5GNZ.pdb: