Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKERFQMKKYQWGIVGLGTIAH-EFAESFNQE-TSELTAVASRTSEKAENFAHRYNIPKAYGSYQEMLDDAEIDIVYIAVPNRQHIDHILAALEAGKHVLCEKAITMNKKELADAMRLAEEKNLILAEAMTIFNMPLYQQLRSIMDTGKLGALKMIQAPFGSYKEPDPKNRFFNPELAGGALLDIGTYAVSFARFFLSSQPEVV-ASTM-VPFETGVDEQSVTILRNKENELAAVSLTFQAKMPKVGIVAFENGYVTIADYPR-----ADRAEILFTDGTKEFIESGNTSEAMNYEIKNMVHMIEGDLPN-RSLFLTKDVIEILDQMQVLWKNM
4HAD Chain:C ((22-344))-------SMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAYMITYSPVWQKVRSLIDEGAIGSLRHVQGAFTYFNR-DA------------GLPDIGVYPVMSTRFSTGKEPLRIQANTERDP-DFGTDIYSSVKADFDDF-ELSFYVSTQMANRQIMVFHGTNGYIEVKSPFNANRWGPEEIELADRSHNESRIFRFQDSRQYRREVEAFARAVENGKEEVVTLENSKLNQKVIDAIYRASEK-


General information:
TITO was launched using:
RESULT:

Template: 4HAD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1695 13446 7.93 44.67
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain C : 0.75

3D Compatibility (PKB) : 7.93
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.504

(partial model without unconserved sides chains):
PDB file : Tito_4HAD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4HAD-query.scw
PDB file : Tito_Scwrl_4HAD.pdb: