Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNSTQQWQSVTWFEVDEHQAGQRIDNFLFSRLKGVPKSRIYRLIREGQVRVNKKRIKAETKLAIGDQIRVAPIRYEQKDETAAPVSDSVAQGLLSRVVYEDEGLLVVNKPSGIAVHGGSGVAYGLIEALRAATGK-KYLELIHRIDRDTSGLVMISKKRSTLKLLQDMLREHKIRKTYAAIVKGQVSLDKQLIDAPLFRYELANGERRVRVSKEGKPSKTEWVVAERFKNATLVHASPLSGRTHQIRVHGLSIGHPLVGDDKYG-----HNTAYTGPEARRLCLHAMRLDI--PG---YPTIEAPLPEDMTQLLEALRVAK
1V9K Chain:A ((4-228))------------------------------------------------------------------------------------------------IMYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKMRNAR


General information:
TITO was launched using:
RESULT:

Template: 1V9K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1133 -2198 -1.94 -10.27
target 2D structure prediction score : 0.56
Monomeric hydrophicity matching model chain A : 0.78

3D Compatibility (PKB) : -1.94
2D Compatibility (Sec. Struct. Predict.) : 0.56
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.482

(partial model without unconserved sides chains):
PDB file : Tito_1V9K.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1V9K-query.scw
PDB file : Tito_Scwrl_1V9K.pdb: