Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQMNTQREQLIHTWLTSVLENDQFQIAYLAGDASFRRYACIQLQNKTYMLMDAPPE--KEDCVPFVTIDEFFAGHGVRVPQIVAKDLNQGFLLLEDFGDVLLSTLLNDET--VDQYYEQSFKQLIHLQSINGAEHFLAYSYEKLLSEMQLLTDWMLPS-LDIHPTAEQKKTIDDAFDFLAQAALAQPQVIVHRDFHSRNLMKIAN---EEELGVIDFQDAVIGADTYDLISITRDAYVQWNAERVYQWFKVFYELLPASARQNRSFDQFKRDADLMAIQRHIKILGIFVRLFERDGKSGYLKDLPRVMWYLLEESRGYHELDDFMAFIHSSVMPKFIEKYGPYEVAA
3CSV Chain:A ((4-326))-----SREDEIRDFLAT-HGYADWNRTP--------RYQRLRSPTGAKAVLMDWSPEEGGDTQPFVDLAQYLRNLDISAPEIYAEEHARGLLLIEDLGDALFTEVINNDPAQEMPLYRAAVDLLIHLHDAQTP-ELARLDPETLSEMTRLAFSEYRYAILGDAA-EDNRKRFEHRFAQILSAQLEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLGHRAYDLVSLLQDARRDVPAQVEAQMIDHYIQATG------VDESHFRSAYAVIAVQRNMRILGIFARLSQRFGKRHYIEFVPRVWAHFERGLA-HPALASAAEEILNALPAPAPE---------


General information:
TITO was launched using:
RESULT:

Template: 3CSV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1450 -43229 -29.81 -140.81
target 2D structure prediction score : 0.64
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : -29.81
2D Compatibility (Sec. Struct. Predict.) : 0.64
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.455

(partial model without unconserved sides chains):
PDB file : Tito_3CSV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3CSV-query.scw
PDB file : Tito_Scwrl_3CSV.pdb: