Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNHFQFQTVPNIISGLGSIQELQNVLASKTYRKLLLVTDAGMIKNQLHLPILQILDTLKIEHVIYADVQADPPEQVVLDAANYAKQQNVDVIVGFGGGSSLDVAKVIALLAHPNQTQNLQEMYGVNQVKTARLPLILIPTTAGTGSEVTPISIVTTGETT-KMGIVSPVLYADTAILDATFTQNLPAHITAATGIDAMVHAIEAYTSKHKKNIYTDILAKHALKLLNHNLPKVLKNGNDLEARQNMLFGSMLAGQAFANSPVAAVHALAYPLGGHFHLSHGHTNALVLVEVLKFNAPYAKQYYAELMQWLDPYSNGST-DGLCDLFIDHMQNHLDRSGLTLKLSDLGIEESSLPRLAQDAMLQTRLLQNNPRDMTETAALAIYQAIY
3BFJ Chain:J ((4-387))-RMFDYLVPNVNFFGPNAISVVGERCQLLGGKKALLVTDKGLRKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATH--EGDLYQYAGIETLTNPLPPIVAVNTTAGTASEVTRHCVLTNTETKVKFVIVSWRNLPSVSINDPLLMIGKPAALTAATGMDALTHAVEAYISKD-ANPVTDAAAMQAIRLIARNLRQAVALGSNLQAREYMAYASLLAGMAFNNANLGYVHAMAHQLGGLYDMPHGVANAVLLPHVARYNLIANPEKFADIAELMGENITGLSTLDAAEKAIAAITRLSMDIGIPQHLRDLGVKETDFPYMAEMALKDG-NAFSNPRKGNEQEIAAIFRQAF


General information:
TITO was launched using:
RESULT:

Template: 3BFJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain J - contact count / total energy / energy per contact / energy per residue : 2395 -146628 -61.22 -385.86
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain J : 0.75

3D Compatibility (PKB) : -61.22
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.542

(partial model without unconserved sides chains):
PDB file : Tito_3BFJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3BFJ-query.scw
PDB file : Tito_Scwrl_3BFJ.pdb: