Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDIFPISLKLQQQRCLIVGGGHIALRKATLLAKAGAIIDVVAPAIEDQLLQLITTTGGVSFIE-AFAEKFLSTPYRLVIAATNDAEVNKTVFEQCEARNLLVNSIDDIPHCRFMVPAIIDRSPLIVSVASNGTSPVLSRQIRTQLETSIPHGMGKLAEFSGKWRNQVKEKISNPDERRIFWENLYASP-LKEQVFNDNLDVADSMLEQALQEWEAPKGEVYLVGAGPGDPELITLKALRLMQQADVVIYDRLVSAPILELCRRDATKIYVGKERSNHSVPQEGINALLVDYAKKGKRVCRLKGGDPFIFGRGGEEIQELFQAGVPFQIVPGITAASGCSAYAGIPLTHRDYALSVRFLTGHLKEGSPELPWNELVYENQTLVLYMGLVGLERICEQLIAHGQRPDMPVALISKGTTPEQKVVVGSLADIASKVTEHQIHAPTLTIIGEVVRLREQLQWN
1PJT Chain:B ((1-454))MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTV-WANEGMLTLVEGPFDETLLD-SCWLAIAATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPSIIDRSPLMVAVSAGGTSPVLARLLREKLESLLPQHLGQVARYAGQLRARVKKQFATMGERRRFWEKFFVNDRLAQSLANADEKAVNATTERLFSEPLDHRGEVVLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVSDDIMNLVRRDADRVFVGKRA--HCVPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLKTGG-ELDWENLAAEKQTLVFYMGLNQAATIQEKLIAFGMQADMPVALVENGTSVKQRVVHGVLTQLGELA--QQVESPALIIVGRVVALRDKLNWF


General information:
TITO was launched using:
RESULT:

Template: 1PJT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 2234 -46475 -20.80 -103.28
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain B : 0.86

3D Compatibility (PKB) : -20.80
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.86
QMean score : 0.592

(partial model without unconserved sides chains):
PDB file : Tito_1PJT.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1PJT-query.scw
PDB file : Tito_Scwrl_1PJT.pdb: