Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMWCFKNGQPVETIPLLDRAFHYGDGCFTTIRVFQNKIELKARHWERLKLACQKLSLVADFELIEQSLQRLQNQNLVLNGTLKIVISRGEGDRGYSLPKHAADIYI---WFYPKALEQFQPDFIQCGVLNQALGLTMPSLVGLKSLNRLEQVLLKKEADQQGWVEALVTDVQGYIVEGVSSNCFIRLNDRWITPELRYNGVHGVMRAEILVRMQHYGIACEVRIIELDEVPQIQSLFFCNALHPMRVVTQISEQILESQACLNLFHTLNLNQIH
2Y4R Chain:A ((23-285))-LDWVDGRPAAELSVRDRGLAYGDGLFETLAVRAGTPRLLERHLARLEEGCRRLAIPLDTAALRQELLAFCAAL--GDGVAKLIVTRGEGLRGYAPPAEASPRRILSGSPRPAYPERHWQQGVRLFACRTRLA-EQPLLAGLKHLNRLEQVLARAEWSDAGHAEGLMLDVHERVVEGVFSNLLLVLDGTLVAPDLRRCGVAGVMRAELLERAEGIGVPLAIRDVSMAELATADEVFLCNSQFGIWPVRALDEHVWPVGELTRKLQDQ------


General information:
TITO was launched using:
RESULT:

Template: 2Y4R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1344 -77135 -57.39 -296.67
target 2D structure prediction score : 0.52
Monomeric hydrophicity matching model chain A : 0.73

3D Compatibility (PKB) : -57.39
2D Compatibility (Sec. Struct. Predict.) : 0.52
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.480

(partial model without unconserved sides chains):
PDB file : Tito_2Y4R.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2Y4R-query.scw
PDB file : Tito_Scwrl_2Y4R.pdb: