Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMALPKKLKLMDLFNEGVSYFGQTGEVTIPKLARKLENWRGGGMEGNVKVDLGFGDDITTFQWKLGGVDPLILEQFGASTVGAHMLRFAGSYQRDDTAEIDAYEIVVRGRHEEIDFGNQKAGDDTETTIKTIWSYYKLSINGVVYMEIDIPSNKFIVKGVDRNAEHMKAIGH
3J9Q Chain:S ((3-160))--IPQTLTNTNLFIDGVSFAGDVPSLTLPKLAVKTEQYRAGGMDAPVSIDMGL--EAMEAKFSTNGARREALNFFGLADQSAFNGVFRGSFKGQKGASVPVVA-TLRGLLKEVDPGDWKAGEKAEFKYAVAVSYYKLEVDGREVYEIDPVNGVRAINGVDQLA--------


General information:
TITO was launched using:
RESULT:

Template: 3J9Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain S - contact count / total energy / energy per contact / energy per residue : 680 -42048 -61.84 -266.13
target 2D structure prediction score : 0.50
Monomeric hydrophicity matching model chain S : 0.75

3D Compatibility (PKB) : -61.84
2D Compatibility (Sec. Struct. Predict.) : 0.50
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.276

(partial model without unconserved sides chains):
PDB file : Tito_3J9Q.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3J9Q-query.scw
PDB file : Tito_Scwrl_3J9Q.pdb: