Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTVKILAVDMDGTFLNSKKQYNKARFLKQYEQLKQNNIRFVVASGNQLAKLVTYFPEINHEIAFIAENGAHVVDAGQELAFAHLSKEQFIEILNAIDPVYTSKMVICGKQSAYVHSSMNAEDYAKVARYFEKLTVIDDFYALDDLVCKITFTAQENESFTIFEHFQKQSFVKDKVLVPVSSGFNFIDLILPDQHKAHGLKLLLQKWQVQPDQVVAIGDNNNDIQMIKAAGYGFAV----EALKSVTPYTTANNEQEGALQVIDLVLQHQPPFA
1RLM Chain:D ((2-269))-AVKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVID---KLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTYPF-


General information:
TITO was launched using:
RESULT:

Template: 1RLM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 1493 -171109 -114.61 -648.14
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain D : 0.83

3D Compatibility (PKB) : -114.61
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.83
QMean score : 0.588

(partial model without unconserved sides chains):
PDB file : Tito_1RLM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1RLM-query.scw
PDB file : Tito_Scwrl_1RLM.pdb: