Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMIRNATIPAYIQSSPNHSNHNNMSLSLSLQKQKDANADGEDYADGRRILMHNPLKGHLFSSTSDSSLHSSIGQPEMIAAASSSVQKGSSGAGNRLDTALGFCGEETAQGLVAEQVEGPCDEKHVNLIEVRAIDSDDDPSSLEEQEHQVCCTIPSLPAVAFIMCFGAIIVGLLGFLPFYFVGVQSNAHTTEYLLSEAMKGVASITQNSLAMLPAFVHIVTFNYIKRHNTTLEETNLPQDPDQLLVSLLTVLTRFNEAISYLRFVYEGGLYTNAGYTDPKPTDANQTRKIYGGYSRTHNTVPMLEMYNESVTAVEPPNVLGYFDFHREVTLPEGAMNQIVKTWVADPQNNTRWLLASDNTTPTYFNFVMPFTVNGSLGYFAAGSSSDTIIEETTTLVSFLRKNGRIFLVDATRNIVVGNSWNQSVQSRTEDSAIGATIYTPTRIYEITEPIILAAMQVVNESGSLTEVLKDKDTALITFRYKGNNAFLNLTKVKDSYGLDLVLGVVVVRADFEKAFSTARTAAFTVTVLVVVIAAVVAVVIAWFVVREMKRLIPQLIRASNLEVSRGDGKDHRVQGWLAYITEIRGIHEAFVRVERSLREMRTFVPAAVMTLAPSDGSHSDADLADGKTRRVRTRFNANIVKDNTNEFSRVDVAMVLVDVHRAMDTTEACFIMDIISQRAEEYTGYIESVSSSSFFVNFGTQSQNPLVVSKICRFALEVYQSVPDFMRNRVVCFAVRMPFLVGTCGARHSKARVVFDTQRMLDISKVLWDIGCHVASTTDTLSHFATSSAQIPWYRIDCVRFPDEVSQVTLCELRDPRSSLQDNEDMPKKMGDGLSKMCKGEYKQALMIFDSAHSENVQLKRLRKICIDRIASGDTSKYIHLIQDVYALDATPSNHEDMAVGGGAAMYDYDAGSPAGVATSSGEVCDPSNEPPLLACSSFENGAGMPAPVLSQPAAHASPPVAPHTTPICHSKTSPTPSVTTGGEAAEPSHLTERAVTAAMGPREFPPCGASQVVGASGAGPGLPPFHPRTPGATTTAASVPGSSPPWGARDDNASEAPSFLTNAFVFDSSMASADAVGATVQAADEPQVLRDVNQHEWQVSLYPIGSGAFSFIYLGMSDDGVQVAIKRIPRLHRGIKEEEMVSEVCTCAKLRHPNIVPYISCCVTQSYLAIIMEYMPGGSLHDIIDNFGKLPRTVVRRFMLDIVNGLAYLHES--TTHGDVKPHNILLGVDGVCKLSDFGSASDRLTEACCVNEDRLMRGTAVYISPEGARNLPLTSASDIYSLGISFLEMVLGRLPWKWADPESTDELPLRHDHEFVQCLTANAIVVDIPDDLDNDMRELALASCAENPEKR-----PTAQELLSFAFLI-----------------------------
5KCV Chain:A ((20-452))-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IVKEGWLHKRGEYITWRPRYFLLKNDGTFIGYKERPAPLNNFSVAQCQLMKTERPRPN----------------TFIIRCLQWTTVIERTFHVETPEEREEWTTAIQRVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKVLQ---------------NSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCPE-------------------YLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRF-------------PRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKKLSPPFKPQVTSETDTRYF


General information:
TITO was launched using:
RESULT:

Template: 5KCV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1555 -93106 -59.87 -293.71
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain A : 0.54

3D Compatibility (PKB) : -59.87
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.54
QMean score : 0.370

(partial model without unconserved sides chains):
PDB file : Tito_5KCV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5KCV-query.scw
PDB file : Tito_Scwrl_5KCV.pdb: