Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceRPYHGRIQDLRRPLLCDVYIEYPSGQVFDQALGHDIVPAGETAEISGFKCKTVR-GTCVILPTCDTPPEYRVTSWKFEREMSD---PERTRFIARFPNVRI--
5JA9 Chain:C ((2-109))KSVFVESTIFEKYR--DEYLSDEEYRLFQAELMLNPKLGDVIQGTGGLRKIRVASGSRIIYYFLDEKRRFYLLTIYGKNEMSDLNANQRKQLMAFMEAWRNEQ


General information:
TITO was launched using:
RESULT:

Template: 5JA9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 367 -38586 -105.14 -406.17
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain C : 0.67

3D Compatibility (PKB) : -105.14
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.345

(partial model without unconserved sides chains):
PDB file : Tito_5JA9.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5JA9-query.scw
PDB file : Tito_Scwrl_5JA9.pdb: