Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKPEFLESAEFYNRRYHNFSSSVIVPMALLLVFLLGFATVAEKEMSLSTRATVEPSRILANIQSTSNNRILVNHLEENKLVKKGDLLVQYQEGAEGVQAESYASQLDMLKDQKKQLEYLQKSLQEGENHFPEEDKFGYQATFRDYISQAGSLRASTSQQNETIASQNAAASQTQAEIGNLISQTEAKIRDYQTAKSAIETGTSLAGQNLAYSLYQSYKSQGEENPQTKVQAVAQVEAQISQLESSLATYRVQYAGSGTQQAYASGLSSQLESLKSQHLAKVGQELSLLAQKILEAESGKKVQGNLLDKGKITASEDGVLHLNPETSDSSMVAEGTLLAQLYPSLEREGKAKLTAYLSSKDVARIKVGDSVRYTTTHDAGNQLFLDSTITSIDATATKTEKGNFFKIEAETNLTSEQAEKLRYGVEGRLQMITGKKSYLRYYLDQFLNKE
4TKO Chain:B ((3-349))------------HRIEYAITNAVFVKA--------------DELSYLSFRVS---------------GKVIEVYKDLGDYVKRGEALAKLDPTYYELEKRTLEKKMSALLEKKKALEIKIQKLEKG-------------------------LHISLSAKKLKVESLKKKREALREKLLQVEEKIKLVKLDWERYKSLFQKGL----------IPRRKFEEVDTNLKVLLHEREYLEKSIQEINTEIKRAKKGIENARNEFKTIEELKKELSSLE--------EEIKSLKERIKTAEQKIK-------DTVLIAPFDGVVAKRFISRGDVVRAGQPAFALV-----NPESFYVEVLLEETKLKGVKVGNKAYVRL--DAYPDILFEGVVEEISPVQ---------RIPVKIKITKGDLSLLRVGMGGEVEIRRT----------------


General information:
TITO was launched using:
RESULT:

Template: 4TKO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1132 -79276 -70.03 -243.18
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain B : 0.64

3D Compatibility (PKB) : -70.03
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.309

(partial model without unconserved sides chains):
PDB file : Tito_4TKO.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4TKO-query.scw
PDB file : Tito_Scwrl_4TKO.pdb: