Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKSLRFQSVFDIIGPVMIGPSSSHTAGAVRIGKIVSSIFDDTPTEVEFQLFNSFAKTYRGHGTDLALVAGILGMDTDDPEIPNSLEIAHKRGIKIVWTIQKDSNAPHPNTTKITVKNAH-KTISVTGISIGGG-NIQVTELNGFAVSLNMNTPTIIIVHQDIPGMIALVTEALSRYGINIAQMNVTREKAGEKAIMIIEVDSRNCDEAIEEIRKIPHLHNVNFFK
3DDN Chain:A ((329-526))--------------------------LVRKLGVLAGVLSDELPVSLSVQVRGELAAEEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERGVTAEICKASES-PNHRSVVDVRAVGADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYKLEVVD


General information:
TITO was launched using:
RESULT:

Template: 3DDN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 968 -48407 -50.01 -246.97
target 2D structure prediction score : 0.73
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : -50.01
2D Compatibility (Sec. Struct. Predict.) : 0.73
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.513

(partial model without unconserved sides chains):
PDB file : Tito_3DDN.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3DDN-query.scw
PDB file : Tito_Scwrl_3DDN.pdb: