Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMVMSDNTKYIFLSPHLDDAIFSCGDYISKLTSEGEIVLVITIFSGYPLSQQLQPSAKQFHKLCNLGKYPIEE----RKKEDRLACERLQCDFRHLSYYECLYRKDRNGNFLYRHI----------YSELKNEDTLKN--DIIKELLMHLDDKCVVYCPLSLGDHVDHVFVNSIGR-ALEFMRYKVIYYEDFPY-VSDSSMVSY-----MGKTKELKMYQEELDEKHYIDRISSILCYKSQILIIWKSVEKLLNNIKELYLRNG--AAYSIRFWIKK
3DFF Chain:A ((8-265))------TRLLAISPHLDDAVLSFGAGLAQAAQDGANVLVYTVFAGA-AQPPYSPAAQRMHTIWGLA--PDDDAVLYRRKEDIAALDHLRVAHRHGRFLDSIYRKLPDGRWLTAHVEGRQKLAVNDHSPDSDHDLVGEVADDIRSIIDEFDPTLVVTC-AAIGEHPDHEATRDAALFATHEKNVPVRLWEDLPYAVFKSGAVELPQGFRLGSADVSSVKPEMRSQK-----FQAVERYSSQMVLLNGSENNLFDRLDEHARQNAPHGGYGETTW---


General information:
TITO was launched using:
RESULT:

Template: 3DFF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1180 -32879 -27.86 -141.11
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain A : 0.74

3D Compatibility (PKB) : -27.86
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.74
QMean score : 0.465

(partial model without unconserved sides chains):
PDB file : Tito_3DFF.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3DFF-query.scw
PDB file : Tito_Scwrl_3DFF.pdb: