Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKFVAELIGTFMLVFVGTGAVVFGNGLD--GLGHLGIAFAFGLAIVVAAYSIGTVSGAHLNPAVSIAMFVNKRLSSSELVNYILGQVVGAFIASGAVFFLLANS-GMSTASLGE----NALANGVTVFGGFLFEVIATFLFVLVIMTVTSESKGNGAIAGLVIGLSLMAMILVGLKITGLSVNPARSLAPAVLVGGAALQQVWIFILAPIAGGVLAALVAKNFLGTEE
3LLQ Chain:A ((2-228))GRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGR-VPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFGEKD-


General information:
TITO was launched using:
RESULT:

Template: 3LLQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1198 -147121 -122.81 -668.73
target 2D structure prediction score : 0.75
Monomeric hydrophicity matching model chain A : 0.87

3D Compatibility (PKB) : -122.81
2D Compatibility (Sec. Struct. Predict.) : 0.75
1D Compatibility (Hydrophobicity) : 0.87
QMean score : 0.384

(partial model without unconserved sides chains):
PDB file : Tito_3LLQ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3LLQ-query.scw
PDB file : Tito_Scwrl_3LLQ.pdb: