Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKPVPKIYRTTNWSSYNQALIKRGNISIWFDPKTQWYAQPQGKHGRNQTYSD-------AAIQCCLMIKSLFRLSLRMVTGFAQSLIKLCGLNWTAPDYSTLCRRQKRIDIAISYQQSR-------DGLHLLVDSTGLKFLGEGEWK-RKKHQPAYRRQWRKLHIGIDAKTLQIRAVQLTTNNVSDSQVLGDLLDQIPLDERIDSVYTDGAYDTKHCRQVILDRDAHAVIPPRKNAKPWKDKKLRSLARNELLKTVKRLGRSLWKKWSGYHRRSLVETKMHCIK
2HDW Chain:A ((116-255))----------------YAQTMAERGFVTLAFDPS---YTGESGGQPRNVASPDINTEDFSAAVDFISLLPEVNRERI--------GVIGICGWGGMALNAVAVDKRVKAVVTSTMYDMTRVMSKGYNDSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELKGG----------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 2HDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 362 -9671 -26.72 -77.37
target 2D structure prediction score : 0.40
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : -26.72
2D Compatibility (Sec. Struct. Predict.) : 0.40
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.230

(partial model without unconserved sides chains):
PDB file : Tito_2HDW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2HDW-query.scw
PDB file : Tito_Scwrl_2HDW.pdb: