Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKPVPKIY----RTTNWSSYNQALIKRGNISIWFDPKTQWYAQPQGKHGRNQ------TYSDTAIQCCLMIKSLFRLSLRMVTGFAQS----LIKLCGLNWTA-PDYSTVCR---------RKKH-------IDIAISYQQSRDGLH--LLVDSTGLKFL-GEGEWKRKKHQPEYRRQWRKLHIGIDAKTLQIRAVQLTTNNVSDSQVL-GDLLDQIP-LDERIDSVYTDGAYDTKHCRQVILDRDAHAVIPPRKN--AKPWKDKKLRSLERNELLKTVKRLGRSLW-KKWSGYHRRSLVETKMHCIK
4IIK Chain:A ((1-314))MRSIITQICNGVLHGQSYQSGSNDLDK-GNSEIFASSL-FVHLNEQGKEIKDSDDKIVIGYTKDGMAFQIVVDGFYGCERQAVFSFIDNYVLPLIDNFSLDLTRYPDSKKVTESLIHTIYSLRSKHAPLAEFTMSLCVTYQKDEQLFCAGFGIGDTGIAIKRNEGT----IEQLVCHTEVDGFKDAFDNYSSANIDLVIERNSVFNTKVMPGDELVGYTYVPPMLEMTEKEFEVEKRIVRHLNLDPGNFDDKDPLFSQLLQVVKSKQKQLVEQAKETGQIQRFGDDFTVGRLVIPDQLLINQLRIHALS


General information:
TITO was launched using:
RESULT:

Template: 4IIK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1361 54632 40.14 206.94
target 2D structure prediction score : 0.44
Monomeric hydrophicity matching model chain A : 0.68

3D Compatibility (PKB) : 40.14
2D Compatibility (Sec. Struct. Predict.) : 0.44
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.134

(partial model without unconserved sides chains):
PDB file : Tito_4IIK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4IIK-query.scw
PDB file : Tito_Scwrl_4IIK.pdb: