Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMISLSDLRKFKAEGRKFSCLTCYDASMAKAMELAEIDTILIGDSLGMAIQGRDSTLPVTVEDMAYHTAAVRRGNQHALIMTDLPFMSYATLKDALQNAKTVMQAGAQMIKIEGGAWLSETVQVLTRNGVPVCVHLGLTPQSVHVFGGYKLQARTREAADQLIADCTAVVEAGAAVLLLECVPAQLGQEIAELFPNTPVIGIGAGNATDGQVLVVQDMLGLTFGRVARFVRNFMKEQSGETAILDAFKAFHAAVQDQSFPAKEHTFQVEL
1M3U Chain:D ((5-264))--TISLLQKYKQEKKRFATITAYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAATVMRAGANMVKIEGGEWLVETVQMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGDQLLSDALALEAAGAQLLVLECVPVELAKRITEALA-IPVIGIGAGNVTDGQILVMHDAFGITGGHIPKFAKNFLAE-TGD--IRAAVRQYMAEVESGVYPGEEHSFH---


General information:
TITO was launched using:
RESULT:

Template: 1M3U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 1532 -217605 -142.04 -836.94
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain D : 0.90

3D Compatibility (PKB) : -142.04
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.90
QMean score : 0.590

(partial model without unconserved sides chains):
PDB file : Tito_1M3U.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1M3U-query.scw
PDB file : Tito_Scwrl_1M3U.pdb: