Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQPIRWYQNIPVISWLTLRGKCGHCQHPISIRYPAVELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDRFTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSLLGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG
5K2M Chain:F ((3-35))------------------------------------------------------------------------ECPVCGSEIEIGEVEL-----HQIVECPVCGAELEVVS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 5K2M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain F - contact count / total energy / energy per contact / energy per residue : 85 -16424 -193.22 -497.70
target 2D structure prediction score : 0.48
Monomeric hydrophicity matching model chain F : 0.37

3D Compatibility (PKB) : -193.22
2D Compatibility (Sec. Struct. Predict.) : 0.48
1D Compatibility (Hydrophobicity) : 0.37
QMean score : 0.755

(partial model without unconserved sides chains):
PDB file : Tito_5K2M.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5K2M-query.scw
PDB file : Tito_Scwrl_5K2M.pdb: