Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMYKILAGVGSIVRTLFMVFTHGFRKRDTILYPEVPAEEIVPPRYRGRIILTRDPDGEERCVACNLCAVACPVGCISLQKAEKEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPDFELGEYVRQDLVYEKENLLISGPGKYPDYNFYRVTGMAINGKEKGQAQKESAPIDVRSLLP
5LDW Chain:I ((30-158))----------LIRGLGMTLSYLFREPATINYPFEKGP--LSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLNNG---------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 5LDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain I - contact count / total energy / energy per contact / energy per residue : 418 -65436 -156.55 -507.26
target 2D structure prediction score : 0.50
Monomeric hydrophicity matching model chain I : 0.71

3D Compatibility (PKB) : -156.55
2D Compatibility (Sec. Struct. Predict.) : 0.50
1D Compatibility (Hydrophobicity) : 0.71
QMean score : 0.326

(partial model without unconserved sides chains):
PDB file : Tito_5LDW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5LDW-query.scw
PDB file : Tito_Scwrl_5LDW.pdb: