Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNRTLKELILAAEFAAIISVLSQM-TIPFG--LVPLTGQTFAIGLTATFLGRKLGLISVGVYLLLGLIGLPVFSGMTGGIAVLFGPTGGYLIGFLLQTWITGWMIERTDAH-----YLYAIFANLMGSLAALICGTIWLKISGDLTFTTAFASGLLPFLLPEAIKATGAAYIGILMKKRLNRFLHTN
4DVE Chain:B ((13-198))NNQKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVPIILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTGGNGGAASFLGPSGGYRIAWLFTPFLIGFFLKKLKITTSQNWFGELIIVLLFGVIFVDFVGAIWLSFQSNIPLLTS-LISNLVFIPGDCIKAILTVVIVRRLRKQGGFELYFR


General information:
TITO was launched using:
RESULT:

Template: 4DVE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 807 -94335 -116.90 -529.97
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain B : 0.79

3D Compatibility (PKB) : -116.90
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.79
QMean score : 0.310

(partial model without unconserved sides chains):
PDB file : Tito_4DVE.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4DVE-query.scw
PDB file : Tito_Scwrl_4DVE.pdb: