Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAILKKIDILQAPYVKEMIETTSNLYRLGWDERNGGNISYLLKEEEITPFLDP-EKVIRRISMIFDASRLAGCYFIVTGSGRYFKNVASEPAENLGIVRVAEDGKTLELLWGLENECLPTSELPSHFMSHIARLEV-DPDNRIVMHCHASHLLAMSFTHELDERSFSRTLWQMCTECLVVFPEGISIIPWMVPGTNEIGEATAEKMKETRLVLWPQHGIYGSGKDMDEVFGLIETAEKAAEVYTYVKAQGPILQTITDENLWHLADAFGVTPKAGYLEEVHTKAGV
2V29 Chain:B ((3-272))-------NITQSWFVQGMIWATTDAWLKGWDERNGGNLTLRLDDADIAPYHDNFHQQPRYIPLSQPMPLLANTPFIVTGSGKFFRNVQLDPAANLGIVKVDSDGAGYHILWGLTNEAVPTSELPAHFLSHCERIKATNGKDRVIMHCHATNLIALTYVLENDTAVFTRQLWEGSTECLVVFPDGVGILPWMVPGTDEIGQATAQEMQKHSLVLWPFHGVFGSGPTLDETFGLIDTAEKSAQVLVKVYSMGGMKQTISREELIALGKRFGVTPLASAL---------


General information:
TITO was launched using:
RESULT:

Template: 2V29.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1419 -46602 -32.84 -173.89
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain B : 0.84

3D Compatibility (PKB) : -32.84
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.84
QMean score : 0.549

(partial model without unconserved sides chains):
PDB file : Tito_2V29.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2V29-query.scw
PDB file : Tito_Scwrl_2V29.pdb: