Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMISMKVVFHIDELEKWSETGKNVKNLIKASPETTIVVSVNGIAITGYLDSAN----AEFLDLQGVVFHACANAMRANHISESSLPEQVIVVPAGVLDLVELQSQGYAYIKP
2PD2 Chain:A ((1-108))---MKVVVQIKDFDKVPQALRSVINLYNDIKDAEIEVVLHQSAIKALLKDSDTRSIIEDLIKKNILIVGCENSIRSQNLSHDQLIPGIKIVTSGVGEIVRKQSEGWIYLAL


General information:
TITO was launched using:
RESULT:

Template: 2PD2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 490 -33560 -68.49 -322.69
target 2D structure prediction score : 0.67
Monomeric hydrophicity matching model chain A : 0.78

3D Compatibility (PKB) : -68.49
2D Compatibility (Sec. Struct. Predict.) : 0.67
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.575

(partial model without unconserved sides chains):
PDB file : Tito_2PD2.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2PD2-query.scw
PDB file : Tito_Scwrl_2PD2.pdb: