Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMYTGISANERKEGARNMEINEQNFGENYHLITITNQNGTSLSVSDLGARVVHFQTIIDNEKRELILGFDEAKEYLEKDPYIGASIGRMAGRITNGTFKLDDETFEVKTDPDTGHCLHGGAPSFEAKQWHYTVINGENEASVIFYQTSPDMENGFPGTLDVEVRYTLTNDDTWRVTVQGISDRKTVFNPTNHVYFNLTGDPAQSIDEHILWLNSRLFATLNKDTTPT--GEVVSVSGTAFDFQRPKKLGEVFASDFRQSMIVGGIDHPFLLKKQSGLLNAAELTSPDEKVSIQVKTDASGIVIFTANFGEDGPEMRGNKLVNHGGITFETQELPGAERLESFGDVTLEPNQVREFVTEYKINIKK
1NSS Chain:B ((2-339))-----------------SIKIRDFGLGSDLISLTNKAGVTISFTNLGARIVDWQ----KDGKHLILGFDSAKEYLEKDAYPGATVGPTAGRIKDGLVKISGKDY-ILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISDKDTVFNPTGHVYFNLNGDASESVENHGLRLAASRFVPL-KDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIAHPFLLDQLGLDKEQARLTLDD--TSISVFTDQPSIVIFTANFGDLGTLYHEKKQVHHGGITFECQVSPGSEQIPELGDISLKAGEKYQATTIYSLHTK-


General information:
TITO was launched using:
RESULT:

Template: 1NSS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 2119 -50036 -23.61 -148.92
target 2D structure prediction score : 0.64
Monomeric hydrophicity matching model chain B : 0.81

3D Compatibility (PKB) : -23.61
2D Compatibility (Sec. Struct. Predict.) : 0.64
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.529

(partial model without unconserved sides chains):
PDB file : Tito_1NSS.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1NSS-query.scw
PDB file : Tito_Scwrl_1NSS.pdb: