Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMEDFYTMMDYLISQNGGMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINLGNDMSVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMVETYAILGFVISFLLVLNA
2CYD Chain:E ((1-156))------MMDYLITQNGGMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINLGSDMSVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMVETYAILGFVISFLLVLNA


General information:
TITO was launched using:
RESULT:

Template: 2CYD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain E - contact count / total energy / energy per contact / energy per residue : 746 -90258 -120.99 -578.57
target 2D structure prediction score : 0.67
Monomeric hydrophicity matching model chain E : 0.98

3D Compatibility (PKB) : -120.99
2D Compatibility (Sec. Struct. Predict.) : 0.67
1D Compatibility (Hydrophobicity) : 0.98
QMean score : 0.446

(partial model without unconserved sides chains):
PDB file : Tito_2CYD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2CYD-query.scw
PDB file : Tito_Scwrl_2CYD.pdb: