Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGQVTDDLANSIIAQLLFLDAQDSEKDIYLYINSPGGSVTAGMAIYDTMNFVKADVQTIVMGMAASMGSFLLTAGTKGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILQTRERLNKILAERTGQPLEVIEKDTDRDNYMTAEQAKAYGLIDEVMENSSSLN
5C90 Chain:L ((3-190))--LIPTV---------AYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLAINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM-------


General information:
TITO was launched using:
RESULT:

Template: 5C90.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain L - contact count / total energy / energy per contact / energy per residue : 843 -124505 -147.69 -695.56
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain L : 0.95

3D Compatibility (PKB) : -147.69
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.95
QMean score : 0.581

(partial model without unconserved sides chains):
PDB file : Tito_5C90.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5C90-query.scw
PDB file : Tito_Scwrl_5C90.pdb: