Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTHKIGVVGDKDSVLPFKLFGFDVRYGTTKQTVRQAIEEMAKNEYGVIYVTEQCAALSPETIERYKEQMIPAIVLIPNHQGSLGIGLEEIQKNVEKAVGQNIL
3VR4 Chain:H ((2-103))-TYKIGVVGDKDSVSPFRLFGFDVQHGTTKTEIRKTIDEMAKNEYGVIYITEQCANLVPETIERYKGQLTPAIILIPSHQGTLGIGLEEIQNSVEKAVGQNIL


General information:
TITO was launched using:
RESULT:

Template: 3VR4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain H - contact count / total energy / energy per contact / energy per residue : 406 -58417 -143.88 -572.72
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain H : 0.93

3D Compatibility (PKB) : -143.88
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.93
QMean score : 0.639

(partial model without unconserved sides chains):
PDB file : Tito_3VR4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3VR4-query.scw
PDB file : Tito_Scwrl_3VR4.pdb: