Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMMYAIITYLLTRFTAIFHYVKTCQDMGKAKEK-----------NSL-AETPYNPSSPYSSTKAGSDLLVKAWVRSFGLRATISNCSNNYGPYQHIEKFIPRQVTNILSGIRPKLYGEGKNVRDWIHTNDHSSAVWLILTKGRIGETYLIGADGEEDNKTVMELILEMMGQPKDAYDHVNDRAGHDLRYAIDSTKLREELGWKPEF-TNFRDGLADTIKWYEEHEDWWKKEKEAVEAAYAKNGQ
1OC2 Chain:B ((105-344))-GTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTD-FSEGLEETIQWYTDNQDWWKAEKEAVEANYAKTQ-


General information:
TITO was launched using:
RESULT:

Template: 1OC2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1102 48336 43.86 212.93
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain B : 0.89

3D Compatibility (PKB) : 43.86
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.89
QMean score : 0.404

(partial model without unconserved sides chains):
PDB file : Tito_1OC2.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1OC2-query.scw
PDB file : Tito_Scwrl_1OC2.pdb: