Atome 2 Filter

@TOME V2.3
(Nov 2016)

Ref. - - Doc.

Global output mode :

Sort entries by :

Sequence Color type :

Show alignment :

Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling

Templates Information:

Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]

Sequence color : MutatedHelixStrandConserved

Query sequence : PF00413_MMP11_: (2014-09-06 )
MAPAAWLRSAAARALLPPMLLLLLQPPPLLARALPPDAHHLHAERRGPQPWHAALPSSPAPAPATQEAPRPASSLRPPRCGVPDPSDGLSARNRQKRFVLSGGRWEKTDLTYRILRFPWQLVQEQVRQTMAEALKVWSDVTPLTFTEVHEGRADIMIDFARYWHGDDLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDDQGTDLLQVAAHEFGHVLGLQHTTAAKALMSAFYTFRYPLSLSPDDCRGVQHLYGQPWPTVTSRTPALGPQAGIDTNEIAPLEPDAPPDACEASFDAVSTIRGELFFFKAGFVWRLRGGQLQPGYPALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVYDGEKPVLGPAPLTELGLVRFPVHAALVWGPEKNKIYFFRGRDYWRFHPSTRRVDSPVPRRATDWRGVPSEIDAAFQDADGYAYFLRGRLYWKFDPVKVKALEGFPRLVGPDFFGCAEPANTFL

Atome Classification :

	(17 SA)									.........10........20........30........40........50........60........70........80........90........100.--......110.......120.......130.......140.......-150-----.........160.......170.......180...---....190.......200.--......210.......220.......230.......--240.--........250.......260.......270.......280.......290...--.--.--..300.......310.......320.......-330.......340.......-350........360.......370.-......380..--.....----390.......400.......410.......420...-.-.-..430.......440.......450.......460.......470.......480......
		(Atome)	(Ident)	(Tito)	(Num)		(Ligand)	(Uniprot)		MAPAAWLRSAAARALLPPMLLLLLQPPPLLARALPPDAHHLHAERRGPQPWHAALPSSPAPAPATQEAPRPASSLRPPRCGVPDPSDGLSARNRQKRFVLSGG--RWEKTDLTYRILRFPWQLVQEQVRQTMAEALKVWSDVTPLTFTEVH-E-------GRADIMIDFARYWHGDDLPFDGPGGILAHAFFPKT---HREGDVHFDYDETWTIGD--DQGTDLLQVAAHEFGHVLGLQHTTAAKALMSAFYTF--R--Y--PLSLSPDDCRGVQHLYGQPWPTVTSRTPALGPQAGIDTNEIAPLEPDAPPDACE--A--S--FDAVSTIRGELFFFKAGFVWRLRGGQLQPGYP-ALASRHWQGLPSPVDAAFED-A-QGHIWFFQGAQYWVYDGEKPVLG-PAPLTELGLVR--FPVHA----ALVWGPEKNKIYFFRGRDYWRFHPSTRRVDSPVPRR-A-T-DWRGVPSEIDAAFQDADGYAYFLRGRLYWKFDPVKVKALEGFPRLVGPDFFGCAEPANTFL
7	PsiBlast_PDB	81.11	37%	-116	- C2 -	4FVL		?	A:[9-349]	---------------------------------------------------------------------------------------------------------KWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLH-D-------GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGP---NYGGDAHFDDDETWT-SS--SKGYNLFLVAAHAFGHSLGLDHSKDPGALMFPIYTYTGK--S--HFMLPDDDVQGIQSLYG---------------PGDEDPNPKHP----KTPDKCDPSL--S--LDAITSLRGETMIFKDRFFWRLHPQQVDAEL--FLTKSFWPELPNRIDAAYEHPS-HDLIFIFRGRKFWALNGYDILEGYPKKISELGLPKE-VKKIS----AAVHFEDTGKTLLFSGNQVWRYDDTNHIMDKDYPRL-IEE-DFPGIGDKVDAVYE-KNGYIYFFNGPIQFEY------------------------------
8	PsiBlast_PDB	79.35	37%	-113	- C2 -	4G0D		MMP13_HUMAN	A:[9-349]	---------------------------------------------------------------------------------------------------------KWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLH-D-------GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGP---NYGGDAHFDDDETWT-SS--SKGYNLFLVAAHAFGHSLGLDHSKDPGALMFPIYTYTGK--S--HFMLPDDDVQGIQSLYG---------------PGDEDPNPKHP----KTPDKCDPSL--S--LDAITSLRGETMIFKDRFFWRLHPQQVDAEL--FLTKSFWPELPNRIDAAYEHPS-HDLIFIFRGRKFWALNGYDILEGYPKKISELGLPKE-VKKIS----AAVHFEDTGKTLLFSGNQVWRYDDTNHIMDKDYPRL-IEE-DFPGIGDKVDAVYE-KNGYIYFFNGPIQFEY------------------------------
5	PsiBlast_PDB	76.84	38%	-107	- C2 -	1FBL		MMP1_PIG	A:[1-349]	-------------------------------------------------------------------------------------------------FVLTPGNPRWENTHLTYRIENYTPDLSREDVDRAIEKAFQLWSNVSPLTFTKVS-E-------GQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGP---GIGGDAHFDEDERWT-KN--FRDYNLYRVAAHELGHSLGLSHSTDIGALMYPNYIY--T--G--DVQLSQDDIDGIQAIYG---PSENPVQPS-GPQT---------------PQVCD--SKLT--FDAITTLRGELMFFKDRFY--MRTNSFYPEVELNFISVFWPQVPNGLQAAYEI-ADRDEVRFFKGNKYWAVRGQDVLYG--YPKDIHRSFG--FPSTVKNIDAAVFEEDTGKTYFFVAHECWRYDEYKQSMDTGYPKMIA-E-EFPGIGNKVDAVFQ-KDGFLYFFHGTRQYQFD-----------------------------
38	HHSearch	76.73	37%	-107	- C2 -	3BA0		MMP12_HUMAN	A:[1-365]	-----------------------------------------------------------------------------------------------------GP--VWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKIN-T-------GMADILVVFARGAHGDDHAFDGKGGILAHAFGPGS---GIGGDAHFDEDEFWTTH---SGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKY--V--DINTFRLSADDIRGIQSLYGDPKENQRL--P----N-----------PDNSEPALCD--P--NLSFDAVTTVGNKIFFFKDRFFWLKVSE-RPKTSV-NLISSLWPTLPSGIEAAYEIEA-RNQVFLFKDDKYWLISNLRPEPNYPKSIHSFGFPNFVKKIDA----AVFNP-RFYRTYFFVDNQYWRYDERRQMMDPGYPKL-I-TKNFQGIGPKIDAVFYSKNKYYYFFQGSNQFEYDFLLQRIT---KTLKSNSWFGC--------
50	HHSearch	55.18	94%	-107	- C2 -	1HV5		MMP11_MOUSE	A:[2-162]	-------------------------------------------------------------------------------------------------FVLSGG--RWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVH-E-------GRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKT---HREGDVHFDYDETWTIGD--NQGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTF--R--Y--PLSLSPDDRRGIQHLYG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25	PsiBlast_CBE	55.18	93%	-105	- C2 -	1HV5		MMP11_MOUSE	B:[2-164]	-------------------------------------------------------------------------------------------------FVLSGG--RWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVH-E-------GRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKT---HREGDVHFDYDETWTIGD--NQGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTF--R--Y--PLSLSPDDRRGIQHLYGRP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21	PsiBlast_CBE	52.50	93%	-101	- C2 -	1HV5		MMP11_MOUSE	F:[2-162]	-------------------------------------------------------------------------------------------------FVLSGG--RWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVH-E-------GRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKT---HREGDVHFDYDETWTIGD--NQGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTF--R--Y--PLSLSPDDRRGIQHLYG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20	PsiBlast_PDB	42.50	50%	-104	- C2 -	3LJZ		MMP13_HUMAN	A:[9-164]	---------------------------------------------------------------------------------------------------------KWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLH-D-------GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGP---NYGGDAHFDDDETWT-SS--SKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYT-------HFMLPDDDVQGIQSLYG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14	PsiBlast_PDB	42.02	50%	-104	- C2 -	2OW9		MMP13_HUMAN	A:[12-167]	---------------------------------------------------------------------------------------------------------KWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLH-D-------GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGP---NYGGDAHFDDDETWT-SS--SKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGK--S--HFMLPDDDVQGIQSLYG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16	PsiBlast_PDB	42.01	50%	-106	- C2 -	2D1N		MMP13_HUMAN	A:[9-164]	---------------------------------------------------------------------------------------------------------KWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLH-D-------GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGP---NYGGDAHFDDDETWT-SS--SKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGK--S--HFMLPDDDVQGIQSLYG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51	HHSearch	41.60	45%	-102	- C2 -	1RM8		MMP16_HUMAN	A:[1-169]	-----------------------------------------------------------------------------------------------------GQ--KWQHKHITYSIKNVTPKVGDPETRKAIRRAFDVWQNVTPLTFEEVP-YSELENGKRDVDITIIFASGFHGDSSPFDGEGGFLAHAYFPGP---GIGGDTHFDSDEPWTLGNPNHDGNDLFLVAVHELGHALGLEHSNDPTAIMAPFYQY--METD--NFKLPNDDLQGIQKIYGP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17	PsiBlast_PDB	41.55	50%	-102	- C2 -	1ZTQ		MMP13_HUMAN	A:[9-164]	---------------------------------------------------------------------------------------------------------KWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLH-D-------GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGP---NYGGDAHFDDDETWT-SS--SKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGK--S--HFMLPDDDVQGIQSLYG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
54	HHSearch	41.20	49%	-98	- C2 -	3AYU		MMP2_HUMAN	A:[2-165]	------------------------------------------------------------------------------------------------NFFPRKP--KWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIH-D-------GEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGT---GVGGDSHFDDDELWTLGK--GVGYSLFLVAAHAFGHAMGLEHSQDPGALMAPIYTY--T--K--NFRLSQDDIKGIQELYGAS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
60	HHSearch	41.16	48%	-99	* C2 *	1I76		MMP8_HUMAN	A:[2-163]	-------------------------------------------------------------------------------------------------LTPGNP--KWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRIS-Q-------GEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQ---GIGGDAHFDAEETWTNT---SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAF--R--ETSNYSLPQDDIDGIQAIYG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19	PsiBlast_PDB	40.71	50%	-101	- C2 -	2PJT		MMP13_HUMAN	A:[9-164]	---------------------------------------------------------------------------------------------------------KWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLH-D-------GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGP---NYGGDAHFDDDETWT-SS--SKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYT-------HFMLPDDDVQGIQSLYG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
53	HHSearch	39.10	44%	-99	- C2 -	4IN9		?	A:[1-165]	-------------------------------------------------------------------------------------------------YVLQGS--KWNKTTLKYYIYN----LTTTERENAIRSAFALWSDKSTLSFIQVYNP-------NQADIKIKWEKGNHGDGYPFDGNTGILAHAFYPPPAGGNYAGHLHFDDDENWSIN---GSGIDLITVAAHEIGHLLGIEHSNVSSALMYPYYTG--I--K--R-QLDNDDCLAVWDLYGYP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
52	HHSearch	38.82	46%	-93	- C2 -	4H1Q		MMP9_HUMAN	A:[3-160]	----------------------------------------------------------------------------------------------------GDL--KWHHHNITYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVY-S-------RDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGP---GIQGDAHFDDDELWSLGK--GQGYSLFLVAAHQFGHALGLDHSSVPEALMYPMYRF--T--E--GPPLHKDDVNGIRHLYG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------