@TOME V2.3
(Nov 2016)

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3D Common Core:

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Complexes Modeling
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Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : P2RY4_HUMAN: (2016-01-14 )
MASTESSLLRSLGLSPGPGSSEVELDCWFDEDFKFILLPVSYAVVFVLGLGLNAPTLWLFIFRLRPWDATATYMFHLALSDTLYVLSLPTLIYYYAAHNHWPFGTEICKFVRFLFYWNLYCSVLFLTCISVHRYLGICHPLRALRWGRPRLAGLLCLAVWLVVAGCLVPNLFFVTTSNKGTTVLCHDTTRPEEFDHYVHFSSAVMGLLFGVPCLVTLVCYGLMARRLYQPLPGSAQSSSRLRSLRTIAVVLTVFAVCFVPFHITRTIYYLARLLEADCRVLNIVNVVYKVTRPLASANSCLDPVLYLLTGDKYRRQLRQLCGGGKPQPRTAASSLALVSLPEDSSCRWAATPQDSSCSTPRADRL

Atome Classification :

(20 SA) .........10-.........20........30.-.......40........50........60........70........80......-..---90........100.......110.......120.......130.......140....---...150.-----.....--.160.......170----.....-..180...-.-...190.----.-.....200---.......210.......220-......---------------.-.230.-------.---------------------------------------------------------------------------------------------------------------------------------------------------------------.---------------------------------------------------------------------------------------------------------------------------------------------------------------....--------------------------------240..-.....250.......260.......270.---.--.-....280.......290.......300.......310.....---..320.......330.......340.......350.......360...
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) MASTESSLLR--SLGLSPGPGSSEVELDCWFDED-FKFILLPVSYAVVFVLGLGLNAPTLWLFIFRLRPWDATATYMFHLALSDTLYVLS-LP---TLIYYYAAHNHWPFGTEICKFVRFLFYWNLYCSVLFLTCISVHRYLGICHPLRALRW---GRPRLAG-----LLCLA--VWLVVAGCLVPNLF----FVTTS-NKGTTVLC-H-DTTRPEE----F-DHYVHFSS---AVMGLLFGVPCLVTLVCYG--LMARRL---------------Y-QPLPG-------S---------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------QSSS--------------------------------RLRSL-RTIAVVLTVFAVCFVPFHITRTIYYLARL---L--E-ADCRVLNIVNVVYKVTRPLASANSCLDPVLYLLTGDKYRRQL---RQLCGGGKPQPRTAASSLALVSLPEDSSCRWAATPQDSSCSTPRADRL
44 Fugue 88.1642%-159 - C4 -4XNV P2RY1_HUMAN (first) A:[38-382] -------------------------SFKCALTKTGFQFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFNLALADFLYVLT-LP---ALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYP-KSLGR---LKKKNAI-----CISVL--VWLIVVVAISPILF----YSGTGVRKNKTITC-Y-DTTSDEY----L-RSYFIYSM---CTTVAMFCVPLVLILGCYG--LIVRALIYKMKKYTCTVCGYIY-NPEDG-------D---------------------------------------------------------------------------------------------------------------------------------------------------------------PDNGVNPGTDFKDIVCPLCGVGKDQFEEV-----------------------------------------------------------------------------------------------------------------------------------EEPL--------------------------------RRKSI-YLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQT--P-AMCAFNDRVYATYQVTRGLASLNSCVNPILYFLAGDTFRRR----------------------------------------------------
2 PsiBlast_PDB 85.4336%-162 - C4 -4XNW RUBR_CLOPA A:[48-382] -----------------------------------FQFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFNLALADFLYVLT-LP---ALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYPLKSL-----GRLKKKN-----AICISVLVWLIVVVAISPILF----YSGTGVRKNKTITC-Y-DTTSDEY----L-RSYFIYSM---CTTVAMFCVPLVLILGCYG--LIVRALIYKMKKYTCTVCGYIY-NPEDG-------D---------------------------------------------------------------------------------------------------------------------------------------------------------------P---------------------------------------------------------------------------------------------------------------------------------------------------------------DNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEEPLRRKSI-YLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQT--P-AMCAFNDRVYATYQVTRGLASLNSCVNPILYFLAGDTFRRR----------------------------------------------------
21 PsiBlast_CBE 85.0036%-161 - C4 -4XNW RUBR_CLOPA C:[48-386] -----------------------------------FQFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFNLALADFLYVLT-LP---ALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYPLKSL-----GRLKKKN-----AICISVLVWLIVVVAISPILF----YSGTGVRKNKTITC-Y-DTTSDEY----L-RSYFIYSM---CTTVAMFCVPLVLILGCYG--LIVRALIYKMKKYTCTVCGYIY-NPEDG-------D---------------------------------------------------------------------------------------------------------------------------------------------------------------P---------------------------------------------------------------------------------------------------------------------------------------------------------------DNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEEPLRRKSI-YLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQT--P-AMCAFNDRVYATYQVTRGLASLNSCVNPILYFLAGDTFRRRLSRA------------------------------------------------
1 PsiBlast_PDB 84.0536%-165 - C4 -4XNV P2RY1_HUMAN (first) A:[48-382] -----------------------------------FQFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFNLALADFLYVLT-LP---ALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYP-KSL-----GRLKKKN-----AICISVLVWLIVVVAISPILF----YSGTGVRKNKTITC-Y-DTTSDEY----L-RSYFIYSM---CTTVAMFCVPLVLILGCYG--LIVRALIYKMKKYTCTVCGYIY-NPEDG-------D---------------------------------------------------------------------------------------------------------------------------------------------------------------P---------------------------------------------------------------------------------------------------------------------------------------------------------------DNGVNPGTDFKDIVCPLCGVGKDQFEEVEEPL----RRKSI-YLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQT--P-AMCAFNDRVYATYQVTRGLASLNSCVNPILYFLAGDTFRRR----------------------------------------------------
12 PsiBlast_PDB 77.2421%-160 - C4 -4MBS CCR5_HUMAN (first) A:[34-361] ---------------------------------------LLPPLYSLVFIFGFVGNMLVILILINYKRLKSMTDIYLLNLAISDLFFLLT-VP---FWAHYAAAQ--WDFGNTMCQLLTGLYFIGFFSGIFFIILLTIDRYLAVVHAVFALKA---RTVTFGV-----VTSVI--TWVVAVFASLPNII----FTRSQ-KEGLHYTC-S-SHFPYSQ----Y-QFWKNFQTLKIVILGLV--LPLLVMVICYS--GILKTLLRMKKYTCTVCGYI-Y-NPEDG-------DPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEV------------------------------------------------------------------------------------------------------------------------------E---------------------------------------------------------------------------------------------------------------------------------------------------------------EEKK--------------------------------RHRDV-RLIFTIMIVYFLFWAPYNIVLLLNTFQEF---F--GLNNCSSSNRLDQAMQVTETLGMTHCCINPIIYAFVGEEFRNYL---LVFFQ-------------------------------------------
25 HHSearch 77.1625%-154 - C4 -3ODU CXCR4_HUMAN (first) A:[43-499] -------------------------------NAN-FNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVIT-LP---FWAVDAV--ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRP---RKLLAEK-----VVYVG--VWIPALLLTIPDFI----FANVS-EADDRYIC-D-RFYPNDL-------WVVVFQF---QHIMVGLILPGIVILSCYC--IIISKL---------------S-HSGSN-------IFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGS---------------------------------------------------------------------------------------------------------------------------------------------------------------KGHQ--------------------------------KRKAL-KTTVILILAFFACWLPYYIGISIDSFILL---EIIK-QGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSA---QHALTSGRPLEVLFQ---------------------------------
6 PsiBlast_PDB 76.7331%-157 - C4 -4RWD C562_ECOLX (first) A:[129-406] --------------------------------------------YSAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATST-LP---FQSAKYLMET-WPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDF---RTPAKAK-----LINIC--IWVLASGVGVPIMV----MAVTR-PRDGAVVC-M-LQFPSPS----W-YWDTVTKI---CVFLFAFVVPILIITVCYGLMLLRLRS---------------V-RLLSG-------S---------------------------------------------------------------------------------------------------------------------------------------------------------------K---------------------------------------------------------------------------------------------------------------------------------------------------------------EKDR--------------------------------SLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDI---D--R-RDPLVVAALHLCI----ALGYANSSLNPVLYAFLDENFKRCF---RQLC--------------------------------------------
22 PsiBlast_CBE 76.5531%-157 - C4 -4RWD OPRD_HUMAN B:[129-405] --------------------------------------------YSAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATST-LP---FQSAKYLMET-WPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDF---RTPAKAK-----LINIC--IWVLASGVGVPIMV----MAVTR-PRDGAVVC-M-LQFPSPS----W-YWDTVTKI---CVFLFAFVVPILIITVCYGLMLLRLRS---------------V-RLLSG-------S---------------------------------------------------------------------------------------------------------------------------------------------------------------K---------------------------------------------------------------------------------------------------------------------------------------------------------------EKDR--------------------------------SLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDI---D--R-RDPLVVAALHLCI----ALGYANSSLNPVLYAFLDENFKRCF---RQL---------------------------------------------
4 PsiBlast_PDB 75.8331%-161 - C4 -4N6H OPRD_HUMAN A:[132-409] --------------------------------------------YSAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATST-LP---FQSAKYLMET-WPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDF---RTPAKAK-----LINIC--IWVLASGVGVPIMV----MAVTR-PRDGAVVC-M-LQFPSPS----W-YWDTVTKI---CVFLFAFVVPILIITVCYGLMLLRLRS---------------V-RLLSG-------S---------------------------------------------------------------------------------------------------------------------------------------------------------------K---------------------------------------------------------------------------------------------------------------------------------------------------------------EKDR--------------------------------SLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDI---D--R-RDPLVVAALHLCI----ALGYANSSLNPVLYAFLDENFKRCF---RQLCRKPCG---------------------------------------
5 PsiBlast_PDB 75.7431%-159 - C4 -4RWA C562_ECOLX (first) A:[129-406] --------------------------------------------YSAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATST-LP---FQSAKYLMET-WPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDF---RTPAKAK-----LINIC--IWVLASGVGVPIMV----MAVTR-PRDGAVVC-M-LQFPSPS----W-YWDTVTKI---CVFLFAFVVPILIITVCYGLMLL-------------------------G-------S---------------------------------------------------------------------------------------------------------------------------------------------------------------K---------------------------------------------------------------------------------------------------------------------------------------------------------------EKDR--------------------------------SLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDI---D--R-RDPLVVAALHLCI----ALGYANSSLNPVLYAFLDENFKRCF---RQLC--------------------------------------------
23 PsiBlast_CBE 74.6331%-158 - C4 -4RWA OPRD_HUMAN B:[129-403] --------------------------------------------YSAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATST-LP---FQSAKYLMET-WPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDF---RTPAKAK-----LINIC--IWVLASGVGVPIMV----MAVTR-PRDGAVVC-M-LQFPSPS----W-YWDTVTKI---CVFLFAFVVPILIITVCYGLMLLR------------------------G-------S---------------------------------------------------------------------------------------------------------------------------------------------------------------K---------------------------------------------------------------------------------------------------------------------------------------------------------------EKDR--------------------------------SLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDI---D--R-RDPLVVAALHLCI----ALGYANSSLNPVLYAFLDENFKRCF---R-----------------------------------------------
3 PsiBlast_PDB 74.5932%-168 - C4 -5C1M ? A:[24-294] --------------------------------------------YSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LP---FQSVNYLMGT-WPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDF---RTPRNAK-----IVNVC--NWILSSAIGLPVMF----MATTK-YRQGSIDC-T-LTFSHPT----W-YWENLLKI---CVFIFAFIMPVLIITVCYG--LMILRLKS-------------V-RMLSG-------S---------------------------------------------------------------------------------------------------------------------------------------------------------------K---------------------------------------------------------------------------------------------------------------------------------------------------------------EKDR--------------------------------NLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITI---P--E-TTFQ-----TVSWHFCIALGYTNSCLNPVLYAFLDENFKRCF---------------------------------------------------
24 PsiBlast_CBE 74.1132%-164 - C4 -4EA3 OPRX_HUMAN B:[132-407] --------------------------------------------YLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLT-LPFQGTDILL----GFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDV---RTSSKAQ-----AVNVA--IWALASVVGVPVAI----MGSA------EIECLV-EIPTPQD----Y-WGPV-FAI---CIFLFSFIVPVLVISVCYS--LMIRRL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EKDR--------------------------------NLRRITRLVLVVVAVFVGCWTPVQ----VFVLAQG---L--G-VQPSSETAVAIL-RFCTALGYVNSCLNPILYAFLDENFKACF---RKF---------------------------------------------
7 PsiBlast_PDB 73.6332%-162 - C4 -4EA3 C562_ECOLX (first) A:[132-405] --------------------------------------------YLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLT-LPFQGTDILL----GFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHP----------TSSKAQ-----AVNVA--IWALASVVGVPVAI----MGSAQ-VEDEEIECLV-EIPTPQD----Y-WGPV-FAI---CIFLFSFIVPVLVISVCYS--LMIRRLRG-------------V-RLLSG-------S---------------------------------------------------------------------------------------------------------------------------------------------------------------R---------------------------------------------------------------------------------------------------------------------------------------------------------------EKDR--------------------------------NLRRITRLVLVVVAVFVGCWTPVQ----VFVLAQG---L--G-VQPSSETAVAIL-RFCTALGYVNSCLNPILYAFLDENFKACF---R-----------------------------------------------
36 HHSearch 72.3822%-152 - C4 -3PBL DRD3_HUMAN (first) A:[41-472] ----------------------------------------YALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMP---WVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVA-----LMITA--VWVLAFAVSCPLLF----GFNTT---GDPTVC-S-ISNP-------------DFVI---YSSVVSFYLPFGVTVLVYA--RIYVVL---------------K-QRRRK-------N---------------------------------------------------------------------------------------------------------------------------------------------------------------IFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGVPLR--------------------------------EKKAT-QMVAIVLGAFIVCWLPFFLTHVLNTHCQT-------------CHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAF---LKILSC------------------------------------------
15 PsiBlast_PDB 71.1623%-148 - C4 -2KSB NK1R_HUMAN A:[10-318] --------------DLSPNISTNTSEPNQFVQPA-WQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAF-NT---VVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPL---------QPRLSATATKVVICV---IWVLALLLAFPQGY----YSTTE-TMPSRVVC-M--IEWPEHPNKIY-EKVYHICV---TV--LIYFLPLLVIGYAYT--VVGITL---------------WASEIPG-------D---------------------------------------------------------------------------------------------------------------------------------------------------------------SSDRYHE---------------------------------------------------------------------------------------------------------------------------------------------------------QVSA--------------------------------KRKVV-KMMIVVVCTFAICWLPFH----IFFLLPY---I--N-PDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGF---KHAFRCCPFISAGDYEGLEMKSTRYLQTQGSVYKVSRLETTISTVVGA
14 PsiBlast_PDB 71.1623%-148 - C4 -2KSA NK1R_HUMAN A:[10-318] --------------DLSPNISTNTSEPNQFVQPA-WQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAF-NT---VVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPL---------QPRLSATATKVVICV---IWVLALLLAFPQGY----YSTTE-TMPSRVVC-M--IEWPEHPNKIY-EKVYHICV---TV--LIYFLPLLVIGYAYT--VVGITL---------------WASEIPG-------D---------------------------------------------------------------------------------------------------------------------------------------------------------------SSDRYHE---------------------------------------------------------------------------------------------------------------------------------------------------------QVSA--------------------------------KRKVV-KMMIVVVCTFAICWLPFH----IFFLLPY---I--N-PDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGF---KHAFRCCPFISAGDYEGLEMKSTRYLQTQGSVYKVSRLETTISTVVGA
13 PsiBlast_PDB 71.1623%-148 - C4 -2KS9 NK1R_HUMAN A:[10-318] --------------DLSPNISTNTSEPNQFVQPA-WQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAF-NT---VVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPL---------QPRLSATATKVVICV---IWVLALLLAFPQGY----YSTTE-TMPSRVVC-M--IEWPEHPNKIY-EKVYHICV---TV--LIYFLPLLVIGYAYT--VVGITL---------------WASEIPG-------D---------------------------------------------------------------------------------------------------------------------------------------------------------------SSDRYHE---------------------------------------------------------------------------------------------------------------------------------------------------------QVSA--------------------------------KRKVV-KMMIVVVCTFAICWLPFH----IFFLLPY---I--N-PDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGF---KHAFRCCPFISAGDYEGLEMKSTRYLQTQGSVYKVSRLETTISTVVGA
46 Fugue 70.7318%-129 - C4 -1F88 OPSD_BOVIN A:[1-348] MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEP-WQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG-GF---TTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF---G-ENHAI-----MGVAF--TWVMALACAAPPLVGWSRYIPE----GMQCSC-GIDYYTPHE----E-TNNESFVI---YMFVVHFIIPLIVIFFCYG--QLVFTV---------------K-EAAAS-------A---------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------TQKA--------------------------------EKEVT-RMVIIMVIAFLICWLPYAGVAFYIFTHQG---S--D-FGPIFMTIPAFFAKTSAV-------YNPVIYIMMNKQFRNCM---VTTLCCGKNPSTTV-------------------SKTETSQVAPA----
33 HHSearch 69.6421%-143 - C4 -2KS9 NK1R_HUMAN A:[30-327] -----------------------------------WQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTV---VNFTYA-VHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRL-----SATATK-----VVICV--IWVLALLLAFPQGY----YSTTE-TMPSRVVC-M-IEWPEHP----NKIYEKVYHI---CVTVLIYFLPLLVIGYAYT--VVGITL---------------W-ASEIPGDSSDRYH---------------------------------------------------------------------------------------------------------------------------------------------------------------E---------------------------------------------------------------------------------------------------------------------------------------------------------------QVSA--------------------------------KRKVV-KMMIVVVCTFAICWLPFHIFFLLPYINPD---L-------YLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGF---KHAFRCCPFISAGDYEGLEMKSTRYLQTQGSVYKVSRLETTISTVVGA