@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 476_tVI_POPTR: (2014-05-09 )
QECHGDFQGLITQCSKYVQIQGPQTDPSPDCCNTIKTLDVPCVCKQVTNDIEAVINMAKVAHVAQYCGIPLAHGTKCGSFTIP
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------........--.--10........---20----.----..---.----.------.------.-----------.----------.30.....--------..--.----------40---------.----------...------.....-------50...--.--.-------------.------------.------..----60.....-.----------.----.----70.----.----------....----.-.80-------..------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------QECH
G
D
F
Q
--
G
--
L
I
T
Q
C
S
K
Y
V
Q
---
I
-----Q----GP---Q----T------D------P-----------S----------P
D
C
C
N
T
I
K--------TL--D----------V----------
P
----------
C
V
C
------
K
Q
V
T
N
-------
D
-
I
E
A
--
V
--
I
-------------
N
------------
M
------
A
K
----
V
A
H
V
A
Q
Y
-C----------G----I----PLA----H----------GTKC----G-SFT-------IP------------------------------------
14
HHSearch
89.90
28%
-112
- C4 -
1T12
-
NLTP1_TOBAC
A:
[3-90]
---------------------------------------------------------------------------------------------------
T
C
G
Q
V
T
S
--
N
---
L
A
P
C
L
A
Y
L
R
---
N
-----
T
----
G
-----------------------
P
-----------
L
----------
G
R
C
C
G
G
V
K
--------
A
L
--
V
----------
N
S
A
RT
T
E
D
R
Q
I
A
----------
C
T
C
--------
L
K
S
-------
A
-
A
G
A
--
I
SG
I
-------------
N
------------
L
------
G
K
----
A
A
G
L
P
S
T
-
C
----------
G
----
V
----
N
I
P
YKIS
P
----------
S
T
D
C
----
S
-
K
V
----------------------------------------------
27
HHSearch
85.09
22%
-108
- C4 -
1SM7
-
?
A:
[4-102]
---------------------------------------------------------------------------------------------------
K
C
Q
R
E
F
Q
--
Q
E
Q
H
L
R
A
C
Q
Q
W
I
R
---
Q
-----
Q
LAG-
S
P
---
F
----
S
E
NQW--
G
------
P
QQGPS
L
-----
R
----------
E
Q
C
C
N
E
L
Y
--------
Q
E
--
D
----------
Q
----------
V
----------
C
V
C
------
P
T
L
K
Q
-------
A
-
A
K
S
--
V
--
R
VQGQHGPF-----
Q
------------
S
------
T
R
I
Y
Q
I
A
K
N
L
P
N
V
-
C
----------
N
----
M
----
K
Q
I
----
G
--------------------------------------------------------------------
2
Fugue
83.83
26%
-104
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
---------------------------------------------------------------------------------------------------
I
D
C
G
H
V
D
--
S
--
L
V
R
P
C
L
S
Y
V
Q
--------------
G
G
---
P
-----------
G
------
P
-----------
S
----------
G
Q
C
C
D
G
V
K
--------
N
L
--
H
----------
N
----------
Q
ARS
Q
S
D
R
Q
S
A
C
N
C
L
-----
K
G
I
A
R
-------
G
-
I
H
N
--
L
--
N
--------------------------
E
------
D
N
----
A
R
S
I
P
P
K
-
C
----------
G
VNLP
Y
----
T
I
S
----
L
----------
N
I
D
C
----
S
-
R
V
----------------------------------------------
17
HHSearch
79.59
25%
-95
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[3-91]
---------------------------------------------------------------------------------------------------
T
C
G
Q
V
S
S
--
S
---
L
A
P
C
I
P
Y
V
R
---
G
-----
G
----
G
----------------
A
------
V
-----------
P
----------
P
A
C
C
N
G
I
R
--------
N
V
--
N
N
L
A
RT
T
P
D
R
Q
A
----------
A
----------
C
N
C
--------
L
K
Q
-------
L
-
S
A
S
VP
G
--
V
-------------
N
------------
P
------
N
N
----
A
A
A
L
P
G
K
-
C
----------
G
----
V
----
S
I
P
YKIS
A
----------
S
T
N
C
----
A
-
T
V
----------------------------------------------
23
HHSearch
77.73
26%
-146
- C4 -
2DS2
-
?
B:
[7-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
----------
R
Q
C
C
N
Q
L
R
--------
Q
V
--
D
----------
R
----------
P
----------
C
V
C
------
P
V
L
R
Q
-------
A
-
A
Q
Q
--
V
--
L
Q
R
Q
IIQG
P
Q
----
Q
L
R
R
L
--------
F
------
D
A
----
A
R
N
L
P
N
I
-
C
----------
N
----
I
----
P
N
I
----
G
------------
A
C
----
P
-
F
-----------------------------------------------
18
HHSearch
77.47
25%
-68
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[2-90]
---------------------------------------------------------------------------------------------------
T
C
G
Q
V
Q
G
--
N
--
L
-
A
Q
C
I
G
F
L
Q
---
K
-----
G
----
G
----------------
V
------
V
-----------
P
----------
P
S
C
C
T
G
V
K
--------
N
I
--
L
----------
N
SSRTTADR
R
A
V
----------
C
S
C
------
L
K
A
A
A
-------
G
-
A
V
R
--
G
--
I
-------------
N
------------
P
------
N
N
----
A
E
A
L
P
G
K
-
C
----------
G
----
V
----
N
I
P
YKIS
T
----------
S
T
N
C
----
N
-
S
I
----------------------------------------------
26
HHSearch
76.32
22%
-93
- C4 -
1PSY
-
2SS_RICCO
A:
[17-116]
---------------------------------------------------------------------------------------------------
Q
C
R
Q
E
V
Q
R-
K
--
D
L
S
S
C
E
R
Y
L
R
---
Q
-----
S
S
---
S
R
R
S
T
G
EEV-
L
R-----
M
------
P
GDENQQQESQQ
L
----------
Q
Q
C
C
N
Q
V
K
--------
Q
V
--
R
----------
D
----------
E
----------
C
Q
C
------
E
A
I
K
Y
-------
I
-
A
E
D
--
Q
--
I
Q
Q
G
QLHGEE
S
E
R
-
V
------------
A
------
Q
R
----
A
G
E
I
V
S
S
-
C
----------
G
----
V
--------------------------------------------------------------------------------
21
HHSearch
75.95
17%
-121
- C4 -
2LVF
-
?
A:
[7-101]
---------------------------------------------------------------------------------------------------
E
C
R
E
Q
M
Q
R
Q
Q
--
M
L
S
H
C
R
M
Y
M
R
---
Q
Q
M
E
E
S
T
----
Y
Q
---
T
----
M
------
P
RRGMEP
H
-----------
M
----------
S
E
C
C
E
Q
L
E
--------
G
M
--
D
----------
E
----------
S
----------
C
R
C
------
E
G
L
R
M
-------
M
-
M
R
M
--
M
--
Q
Q
K
EM
Q
P
R
G
E
Q
M
R
R
M
------------
M
------
R
L
----
A
E
N
I
P
S
R
-
C
----------
N
----
L
----
S
---------------------------------------------------------------------------
1
Fugue
75.78
21%
-95
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
------------------------------------------------------------------------------------------------AI
D
L
C
G
M
S
Q
D
--
E
--
L
-
N
E
C
K
P
A
V
S
---
K
-----
E
----
N
P
--------
T
------
S
------
P
-----------
S
----------
Q
P
C
C
T
A
L
Q
--------
H
A
--
D
----------
F
----------
A
----------
C
L
C
------
G
Y
K
N
S
-------
P
-
W
L
G
--
S
F
G
V
-------------
D
------------
P
------
E
L
----
A
S
A
L
P
K
Q
-
C
----------
G
----
L
----
A
------
N
----------
A
P
T
C
------------------------------------------------------
15
HHSearch
74.09
28%
-98
- C4 -
1AFH
-
NLTP_MAIZE
A:
[3-92]
---------------------------------------------------------------------------------------------------
S
C
G
Q
V
A
S
--
A
---
I
A
P
C
I
S
Y
A
R
---
G
-----
Q
----
G
S
---------------
G
------
P
-----------
S
----------
A
G
C
C
S
G
V
R
--------
S
L
--
N
----------
N
A
A
RT
T
A
D
R
R
A
A
----------
C
N
C
--------
L
K
N
-------
A
-
A
A
G
--
V
SG
L
-------------
N
------------
A
------
G
N
----
A
A
S
I
P
S
K
-
C
----------
G
----
V
----
S
I
P
Y
T
I
S
T
----------
S
T
D
C
----
S
-
R
V
----------------------------------------------
30
SP3
72.71
26%
-90
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------------------------------------------A
I
S
C
-
G
Q
V
A
--
S
--
A
I
A
P
C
I
S
Y
A
R
---
G
-----
Q
----
G
S
---
G
------------------
P
-----------
S
----------
A
G
C
C
S
G
V
R
S
L
N
N
A
ART
T
A
--
D
----------
R
----------
R
----------
A
A
C
------
N
C
L
K
N
-------
A
-
A
A
G
--
V
SG
L
-------------
N
------------
A
------
G
N
----
A
A
S
I
P
S
K
-
C
----------
G
----
V
SIPY
T
I
S
----
T
----------
S
T
D
C
----
S
-
R
V
N
---------------------------------------------
10
HHSearch
72.59
23%
-109
- C4 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
--------------------------------------------------------------------------------------------------
D
L
C
G
M
S
Q
D
--
E
--
L
-
N
E
C
K
P
A
V
S
---
K
-----
E
----
N
P
--------
T
------
S
------
P
-----------
S
----------
Q
P
C
C
T
A
L
Q
--------
H
A
--
D
----------
F
----------
A
----------
C
L
C
------
G
Y
K
N
S
-------
P
W
L
G
S
F
-
G
--
V
-------------
D
------------
P
------
E
L
----
A
S
A
L
P
K
Q
-
C
----------
G
----
L
----
A
N
A
----
P
--------------------------------------------------------------------
34
SP3
72.44
19%
-102
- C4 -
1HYP
-
?
?:
[6-80]
--------------------------------------------------------------------------------------------------
P
S
C
P
D
---------
L
S
I
C
L
---
N
---
I
-----
L
----
G
G
---
S
----
L
------
G
------
T
-----------
V
----------
D
D
C
C
A
L
I
G
--------
G
L
--
G
D
I
E
A
------
I
----------
V
----------
C
L
C
------
I
Q
L
R
A
----------
L
G
--
I
--
L
-------------
N
------------
L
------
N
R
----
N
L
Q
L
I
L
N
S
C
----------
G
----
R
----
S
Y
P
----
S
----------
N
A
T
C
----
P
-
R
T
----------------------------------------------
38
SP3
72.02
21%
-128
* C4 *
1S6D
-
2SS8_HELAN
A:
[1-103]
------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
A
E
--
M
L
N
H
C
G
M
Y
L
M
---
K
-----
N
LGE-
R
S
---
Q
----
V
------
S
------
P
-----------
R
M
R
E
E
D
H
K
---
Q
L
C
C
M
Q
L
K
--------
N
L
--
D
----------
E
----------
K
----------
C
M
C
P
A
I
---
M
M
M
L
N
-------
E
-
P
M
W
--
I
--
R
-------------
M
------------
R
------
D
Q
----
V
M
S
M
A
-------------------
H
----
N
L
P
----------------
I
E
C
----
N
-
L
M
S
-------
Q
P
CQM---------------------------------
37
SP3
71.61
24%
-107
- C4 -
1OQC
1
ALR_RAT
A:
[13-124]
--------------------------------------------------------------------------------------------------
E
D
C
P
Q
D
R
E
--
E
--
L
G
R
N
T
W
A
F
L
H
T
L
A
A
-----
Y
----
Y
P
---
D
-----------
M
------
P
-----------
T
P
E
Q
Q
------
Q
D
M
A
Q
F
I
H
--------
I
F
S
K
F
----------
Y
----------
P
------------
C
------
E
E
C
A
E
-------
D
-
I
R
K
--
R
--
I
-------------
D
------------
R
SQPDTS
T
R
----
V
S
F
S
Q
W
L
-
C
R
L
H
N
E
V
N
R
K
L
G
----
K
----
P
D
F
----
D
CSRVDERWRD
G
W
K
D
----
G
-
S
C
----------------------------------------------
16
HHSearch
70.66
26%
-59
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[2-89]
---------------------------------------------------------------------------------------------------
D
C
G
H
V
D
S
--
L
--
V
-
R
P
C
L
S
Y
V
Q
---
G
-----
G
-----
P
---------------
G
------
P
-----------
S
----------
G
Q
C
C
D
G
V
K
--------
N
L
--
H
----------
N
Q
ARS
Q
S
D
R
Q
S
A
----------
C
N
C
------
L
K
G
I
A
-------
R
-
G
I
H
--
N
--
L
-------------
N
------------
E
------
D
N
----
A
R
S
I
P
P
K
-
C
----------
G
----
V
----
N
L
P
Y
T
I
S
L
----------
N
I
D
C
----
S
-
R
-----------------------------------------------
7
Fugue
70.34
17%
-123
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
A
E
--
M
L
N
H
C
G
M
Y
L
M
---
K
-----
N
----
L
G
---
E
----
R
------
S
------
Q
-----------
V
SPR
M
R
E
E
D
H
K
Q
L
C
C
M
Q
L
K
--------
N
L
--
D
----------
E
----------
K
----------
C
M
C
------
P
A
I
M
M
M
L
N
EPMW
I
-
R
M
R
--
D
--
Q
-------------
V
------------
M
------
S
M
----
A
H
N
L
P
I
E
-
C
----------
N
----
L
-----------
M
----------
S
Q
P
C
----
Q
-
M
-----------------------------------------------
8
Fugue
66.86
17%
-76
- C4 -
1PSY
-
2SS_RICCO
A:
[1-125]
---------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
SQQCRQEVQRKDLSS
C
E
R
Y
L
R
Q
S
S
S
R
R
S
T
--
G
--
E
E
V
L
R
M
P
G
D
E
---
N
-----
Q
----
Q
Q
---
E
----
S
------
Q
------
Q
-----------
L
----------
Q
Q
C
C
N
Q
V
K
--------
Q
V
--
R
----------
D
----------
E
----------
C
Q
C
------
E
A
I
K
Y
-------
I
-
A
E
D
--
Q
--
I
-------------
Q
Q
G
QLHGEE
S
E
R
V
A
------
Q
R
----
A
G
E
I
V
S
S
-
C
----------
G
----
V
----
R
C
M
----
R
----------
Q
T
R
T
----
N
-------------------------------------------------
39
SP3
66.43
19%
-97
- C4 -
1HO1
-
PDXJ_ECOLI
A:
[2-243]
A
E
L
L
L
G
V
N
I
D
H
I
A
T
L
R
N
A
RGTAYPD
P
V
Q
A
A
F
I
A
E
Q
A
GAD
G
I
T
V
H
LREDRRHIT
D
R
D
V
R
I
L
R
Q
T
LD
T
R
M
N
L
E
M
A
VT
E
E
M
L
A
I
A
V
E
T
KPH
F
C
C
L
V
P
EEGG
L
D
V
A
G
Q
R
D
--
K
--
M
R
D
A
C
K
R
L
A
D
---
A
----------
G
I
---
Q
V
S
L
F
I
------
D
------
A
-----------
D
----------
E
E
Q
I
K
A
A
A
--------
E
V
--
G
----------
A
----------
P
----------
F
I
E
I
HT
G
C
Y
A
D
A
K
T
-------
D
-
A
E
Q
--
A
--
Q
-------------
E
------------
L
------
A
R
----
I
A
K
A
A
T
F
-
A
---------------------
A
S
----
L
----------
G
L
K
V
N
A
G
H
G
L
T
Y
H
N
V
K
A
I
A
A
I
P
EMH
E
L
N
I
G
H
A
I
I
G
R
A
V
M
TG
L
K
D
A
V
A
E
M
K
R
L
M
L
E
A
R
G
20
HHSearch
60.32
19%
-118
- C4 -
1S6D
-
2SS8_HELAN
A:
[10-97]
---------------------------------------------------------------------------------------------------
G
C
Y
Q
Q
M
E
E
A
E
--
M
L
N
H
C
G
M
Y
L
M
---
K
-----
N
LGER
S
Q
---
V
----
S
PR
M
R
E
E
D
------
H
-----------
K
----------
Q
L
C
C
M
Q
L
K
--------
N
L
--
D
----------
E
----------
K
----------
C
M
C
------
P
A
I
M
M
-------
M
-
L
N
E
--
P
--
M
WIR----------
M
R
D
Q
V
--------
M
------
S
M
----
A
H
N
L
P
I
E
-
C
----------
N
----
L
----
M
---------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70........80..
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
QECH
G
D
F
Q
G
L
I
T
Q
C
S
K
Y
V
Q
I
QGPQTDPSP
D
C
C
N
T
I
KTLDV
P
C
V
C
K
Q
V
T
N
D
I
E
A
V
I
N
M
A
K
V
A
H
V
A
Q
Y
CGIPLAHGTKCGSFTIP
42
98.82
100%
-135
- C- -
M042
-
A:
[1-145]
Q
E
C
H
G
D
F
Q
G
L
I
T
Q
C
S
K
Y
V
Q
I
Q
G
P
Q
T
D
P
S
P
D
C
C
N
T
I
K
T
L
D
V
P
C
V
C
K
Q
V
T
N
D
I
E
A
V
I
N
M
A
K
V
A
H
V
A
Q
Y
C
G
I
P
L
A
H
G
T
K
C
G
S
F
T
I
P
40
39.67
100%
21
- C- -
M040
-
A:
[2-159]
Q
E
C
H
G
D
F
Q
G
L
I
T
Q
C
S
K
Y
V
Q
I
Q
G
P
Q
T
D
P
S
P
D
C
C
N
T
I
K
T
L
D
V
P
C
V
C
K
Q
V
T
N
D
I
E
A
V
I
N
M
A
K
V
A
H
V
A
Q
Y
C
G
I
P
L
A
H
G
T
K
C
G
S
F
T
I
P