@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0200: (2015-11-29 )
MNNGSIALSSILSAITDTILGTLKNTAVNTPNVKSTGYNILPNTASKVVPVVITVIIDPPIL
Atome Classification :
(16 SA)
-------------------------------------------------------------------------------------------------------------------........--.10........20........----30........----.40....---..-----..50--------------.-.......60.-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------MNN
G
S
I
A
L
--
S
S
I
L
S
A
I
T
D
T
I
L
G
T
L
K
NTAVN----T-PNVKSTGY----NILPNTA---SK-----
V
V
P
V
--------------
V
-
I
T
V
IIDPPIL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
83.35
26%
-152
* C11 *
3W3W
1
IMB3_YEAST
A:
[3-1077]
ALP
E
E
V
N
R
T
L
L
Q
I
V
Q
A
FASD
N
Q
I
R
S
V
A
E
K
A
L
S
EEWITENN
I
E
Y
L
L
T
F
L
A
E
Q
A
A
FSQD
T
T
V
A
A
L
S
A
V
L
F
R
K
L
A
L
K
A
PITHIR
K
E
V
L
A
Q
I
R
S
S
L
L
K
G
F
L
SERA
D
S
I
R
H
K
L
S
D
A
I
A
E
C
V
Q
D
D
L
P
A
W
--
P
E
L
L
Q
A
L
I
E
S
L
K
S
-------
G
----
N
-
P
N
F
R
E
S
S
F
----
R
I
L
T
T
-------------
V
P
Y
--------------
L
-
I
T
A
V
D
I
N
S
I
L
P
I
F
Q
S
G
F
T
DAS
D
N
V
K
I
A
A
V
T
A
F
V
G
Y
F
K
Q
LPKSEWSKLGIL
L
P
S
L
L
N
S
L
P
R
F
L
D
D
GK
D
D
A
L
A
S
V
F
E
S
L
I
E
L
V
E
L
APKLFKDM
F
D
Q
I
I
Q
F
T
D
M
V
I
K
NKDLEP
P
A
R
T
T
A
L
E
L
L
T
V
F
S
E
N
A
P
Q
M
C
K
S
N
Q
N
Y
G
Q
T
L
V
M
V
T
L
I
M
M
T
EVSIDDDDA
A
E
W
I
E
SDDTDDEEE
V
T
Y
D
H
A
R
Q
A
L
D
R
V
A
L
K
LGGEYL
A
A
P
L
F
Q
Y
L
Q
Q
M
I
T
STE
W
R
E
R
F
A
A
M
M
A
L
S
S
A
AEGCA
D
V
L
I
G
E
I
P
K
I
L
D
M
V
I
P
L
I
NDPH
P
R
V
Q
Y
G
C
C
N
V
L
G
Q
I
S
T
D
F
S
P
F
I
Q
R
T
A
H
D
R
I
L
P
A
L
I
S
K
L
TSECT
S
R
V
Q
T
H
A
A
A
A
L
V
N
F
S
E
FASKDILEPY
L
D
S
L
L
T
N
L
L
V
L
L
Q
SNK
L
Y
V
Q
E
Q
A
L
T
T
I
A
F
I
A
E
A
A
KNKFIKYYDTL
M
P
L
L
L
N
V
L
K
VN
S
V
L
K
G
K
C
M
E
C
A
T
L
I
G
F
A
V
G
K
E
K
F
H
E
H
S
Q
E
L
I
S
I
L
V
A
L
Q
N
SD
A
L
R
S
Y
L
E
Q
S
W
S
R
I
C
R
I
L
GDDFVPLLPIVI
P
P
L
L
I
T
A
K
ATQDVGLIEEEEAANFQQYPD
W
D
V
V
Q
V
QG
K
H
I
A
I
H
T
S
V
L
D
D
K
V
S
A
M
E
L
L
Q
S
Y
A
T
L
L
RGQFAVY
V
K
E
V
M
E
EI
A
L
P
S
L
D
FYLH
D
G
V
R
A
A
G
A
T
L
I
P
I
L
L
S
C
L
L
A
AE
E
L
V
L
L
W
H
K
A
S
S
K
L
I
G
G
L
M
S
EPM
P
E
I
T
Q
V
Y
H
N
S
L
V
N
G
I
K
V
M
GDNCLS
E
D
Q
L
A
A
F
T
K
G
V
S
A
N
L
T
D
T
Y
E
R
M
Q
DRDEYNED
F
T
D
E
D
L
L
D
E
I
N
K
S
I
A
A
V
L
K
T
T
N
GHY
L
K
N
L
E
N
I
W
P
M
I
N
T
F
L
LE
P
I
L
V
I
F
A
L
V
V
I
G
D
L
I
Q
YEQTASMKNAF
I
P
K
V
T
E
C
L
ISPD
A
R
I
R
Q
A
A
S
Y
I
I
G
V
C
A
Q
YAPSTYADVCIPT
L
D
T
L
V
Q
I
V
DGSKLEEN
R
S
S
T
E
N
A
S
A
A
I
A
K
I
L
Y
A
Y
NSNIPD
T
Y
T
A
N
W
F
K
T
LPTITD
K
E
A
A
S
F
N
Y
Q
F
L
S
QVCAQSN
I
S
A
V
V
D
S
V
I
Q
A
L
N
E
RSLT
V
I
S
S
V
K
K
L
L
G
F
L
P
S
S
D
A
M
A
I
F
N
RYP
A
D
I
M
E
K
V
H
K
W
F
16
Fugue
75.22
22%
-127
- C10 -
4K92
-
CLAP1_HUMAN
A:
[17-259]
--------------------------AV
D
E
E
D
F
I
K
A
F
DD
V
P
V
V
Q
I
YS
S
R
D
L
E
E
S
I
N
K
I
R
E
I
L
S
D
DKHD
W
E
Q
R
V
N
A
L
K
K
I
R
S
L
L
L
A
GAAEYDN
F
F
Q
H
L
R
L
L
D
G
A
F
K
L
S
A
K
DLR
S
Q
V
V
R
E
A
C
I
T
L
--
G
H
L
S
S
V
L
G
----
N
K
F
D
H
G
A
E
A
----
I
M
P
T
I
----
F
----
N
L
I
P
N
S
A
K
I
M
A
T
-----
S
G
V
V
--------------
A
-
V
R
L
I
I
R
H
T
H
I
PRL
I
P
V
I
T
S
N
CTSKS
V
A
V
R
R
R
C
F
E
F
L
D
L
L
L
Q
E
WQTHSLERH
I
S
V
L
A
E
T
I
K
K
G
I
H
DAD
S
E
A
R
I
E
A
R
K
C
Y
W
G
F
H
S
H
F
S
R
E
A
E
H
L
Y
H
T
LE
S
S
Y
Q
K
A
L
Q
S-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
51.86
18%
-11
- C10 -
2GV5
-
SFI1_YEAST
C:
[638-710]
-------------------------------------------------------------------------------------------------------------------
G
P
L
G
S
-
K
L
--
N
D
I
L
H
V
Y
E
K
S
K
E
R
E
L
Q
S
Q
L
F
N
----
A
-
W
R
N
R
F
C
F
Y
TE
E
C
N
I
Q
A
I
S
K
---
R
N
-----
Y
Q
L
E
--------------
K
M
V
L
K
K
F
R
E
R
L
L
E
I
V
K
SEE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
49.01
9%
-117
* C10 *
1F3C
-
DYL1_RAT
A:
[1-89]
-------------------------------------------------------------------------------------------------------------------
M
C
D
R
K
A
V
I
KN
A
D
M
S
E
E
M
Q
Q
D
S
V
E
C
A
T
Q
A
L
E
K
----
Y
-
N
I
E
K
D
I
A
A
----
H
I
K
K
E
F
D
---
K
K
YNP
T
W
H
C
I
V
G
R
N
F
G
S
Y
V
THETKH
F
-
I
Y
F
Y
L
G
Q
V
A
I
L
L
F
K
SG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
47.15
25%
-62
- C9 -
3H0G
-
RPB11_SCHPO
K:
[40-63]
--------------------------------------------------------------------------------------------------------------------------------------
T
L
A
N
M
L
A
N
Q
L
L
S
----
D
-
E
R
V
L
F
A
G
Y
----
K
V
P
H
P
L
N
---
H
N
-----
F
I
L
R
--------------
V
-
Q
T
V
E
D
C
S
P
K
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
39.85
50%
-39
- C1 -
2G1P
2
DMA_ECOLI
A:
[177-184]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
Y
C
D
P
P
Y
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
38.97
14%
-58
- C9 -
1UVJ
1
RDRP_BPPH6
A:
[125-161]
------------------------------------------------------------------------------------------------------------------------------
L
L
F
R
A
A
V
R
L
M
F
S
D
L
E
P
V
P
L
K
----
I
-
R
K
G
S
S
T
C
I
----
P
Y
F
S
N
D
M
---
G
T
-----
K
I
E
I
--------------
A
-
E
R
A
L
E
K
A
E
E
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
38.95
21%
-9
- C8 -
1M5N
-
Q:
[67-94]
--------------------------------------------------------------------------------------------------------------------------------
Y
L
T
Q
E
T
N
K
V
E
T
Y
K
E
Q
P
L
K
----
T
-
P
G
K
K
K
K
G
K
----
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
38.33
50%
-27
- C6 -
2DPM
1
MTD21_STREE
A:
[190-197]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
V
Y
F
D
P
P
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
35.27
30%
-15
- C3 -
2OO3
-
?
A:
[160-169]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-
G
L
I
F
I
D
P
S
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
33.59
38%
-45
- C4 -
2ZIG
-
?
A:
[43-50]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
V
T
S
P
P
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
32.71
64%
-39
* C9 *
2IBF
-
IPAA_SHIFL
B:
[12-25]
-----------------------------------------------------------------------------------------------------------------------
S
S
A
L
--
S
K
V
L
S
K
I
D
D
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
32.17
50%
-80
- C7 -
1G60
1
MTM2_MORBO
A:
[24-33]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
Q
L
A
V
I
D
P
P
Y
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
31.52
17%
13
- C11 -
1OQD
-
TNR17_HUMAN
K:
[1-39]
------------------------------------------------------------------------------------------------------------------------------
C
S
Q
N
E
Y
F
D
S
L
L
H
A
C
I
P
C
Q
L
R
CSSN
T
-
P
P
L
T
C
Q
R
Y
----
C
N
A
S
V
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
25.74
46%
32
- C5 -
1JY4
-
?
A:
[11-23]
---------------------------------------------------------------------------------------------------------------------------------------------
R
T
A
L
N
----
T
--
A
V
Q
K
W
H
F
----
V
L
G
Y
K
C
E
---
I
L
-----
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
22.76
30%
18
- C2 -
1BOO
1
MTP2_PROHU
A:
[34-43]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
S
L
V
M
T
S
P
P
F
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------