@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0243: (2015-11-29 )
MDKTAKYIQKKTKCEFIQQGDGTIVIYSTLDNIEDHLLFLRDDEKCRFELLVDIFGVDYPDREKRFELIYNLLSIVHNIRVHIKLQLYEDDMPPSVVRIFNTASWFEREVFDMYGIEFSNHPDLRRILTDYGFKGHPMLKDFPLTGYEEVRYDIEAKKVVYNPIDLPQDFRMFDSLSPWEGETAKANTKE
Atome Classification :
(20 SA)
-------------------------........--.10----.-----.-.--------.-....20.-.......-------30..-----.......40........50.----------------.------....-----------.--------.60.-.-...-------...70......---..80-.......-----..------90-..--...--...100.--......110...-----....120....---...130.---..-.....140--......------.-..150.......160------........170----...-----------------.....180------------.......190------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------MD
K
T
A
K
Y
I
--
Q
K
K----T-----K-
C
--------
E
-
F
I
QQGD
G
-
T
I
V
I
Y
ST-------L-DN-----IE
D
H
L
L
F
L
RDDE
K
C
R
F
E
L
L
V
----------------
D
------
I
FGV-----------D--------YP
D
R
-
E
-
K
R
F
-------
E
L
I
Y
N
L
L
S
I
VH---N
I
R
--
V
H
I
K
L
Q
L
-----YE------DD-M
P
--
P
S
V
--
V
R
I
F
N
T
A
--
S
W
F
E
R
E
V
F
D
M
YG-----IEFSN
H
P
D
L
R
R
---
I
L
T
D-YG---FK-GHPMLK----DFPLT
G
------
Y
-
E
E
V
R
Y
DIEA
K
K
V
VY-------NPIDL
P
Q
D
F
R
-----
M
FD-----------------SLSPWEGE------------TAKANTKE--------------------------
22
HHSearch
94.31
33%
-122
* C7 *
3MCR
2
?
A:
[78-212]
--------------------------
D
E
V
A
D
A
L
--
E
R
S
----
L
-----
K
E
I
GTP
Y
D
T
A
I
S
-
R
V
V
V
D
R
G
-
E
I
T
F
H
V
Q
-------
R
-
E
H
-----
L
L
D
V
A
T
R
L
R
D
D
P
A
L
R
F
E
L
C
L
----------------
G
------
V
T
G
V
-----------
H
--------
Y
P
E
D
E
G
-
N
E
L
-------
H
A
V
Y
A
L
R
S
I
T
H
---
N
Y
E
--
I
R
L
E
V
S
C
-----
P
D
S-----
D
P
-
H
I
--
P
S
I
--
V
S
V
Y
P
T
N
--
D
W
H
E
R
E
A
W
D
F
F
G
-----
I
I
F
D
G
H
P
A
L
T
-------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
94.04
32%
-122
- C7 -
3MCR
2
?
A:
[59-212]
PAAAQRPYSDPSDPRTAY
F
D
E
V
A
D
A
L
E
R
S
L
K
E
I
GT
P
Y
D
----
T
-----
A
-
I
--------
S
-
R
V
V
V
D
R
G
-
E
I
T
F
H
V
Q
-------
R
-
E
H
-----
L
L
D
V
A
T
R
L
R
D
D
P
A
L
R
F
E
L
C
L
----------------
G
------
V
T
G
V
-----------
H
--------
Y
P
E
D
-
E
G
N
E
L
-------
H
A
V
Y
A
L
R
S
I
T
H
---
N
Y
E
--
I
R
L
E
V
S
C
-----
P
D
------
S
D
P
H
I
--
P
S
I
--
V
S
V
Y
P
T
N
--
D
W
H
E
R
E
A
W
D
F
F
G
-----
I
I
F
D
G
H
P
A
L
T
-------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
81.46
36%
-140
- C7 -
3MCR
2
?
A:
[107-212]
-------------------------------------------------------------------
G
-
E
I
T
F
H
V
Q
-------
R
-
E
H
-----
L
L
D
V
A
T
R
L
R
D
D
P
A
L
R
F
E
L
C
L
----------------
G
------
V
T
G
V
-----------
H
--------
Y
P
E
D
-
E
G
N
E
L
-------
H
A
V
Y
A
L
R
S
I
T
H
---
N
Y
E
--
I
R
L
E
V
S
C
-----
P
D
------
S
D
-
P
H
I
-
P
S
I
--
V
S
V
Y
P
T
N
--
D
W
H
E
R
E
A
W
D
F
F
G
-----
I
I
F
D
G
H
P
A
L
T
-------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
79.60
19%
-51
* C4 *
4WW7
7
BUD32_YEAST
A:
[4-257]
-----------------------E
F
I
D
K
V
S
S
Y
L
--
T
P
D
----
V
-----
D
-
I
--------
A
-
P
I
S
Q
G
A
A
-
I
V
F
T
T
T
T
HPYLPRA
K
-
D
S
-----
H
Q
K
Y
I
I
K
Y
R
P
R
T
L
N
E
S
R
L
L
A
----------------
K
------
L
Y
L
I
-----------
P
G
L
C
V
P
Q
LI
A
C
D
P
-
Y
-
N
G
F
-------
I
W
L
E
F
L
G
E
D
L
P
---
G
G
H
GF
S
N
L
K
N
F
L
-----
W
M
------
H
D
-
Q
D
--
P
Y
S
--
D
L
V
A
T
T
L
--
R
K
V
G
R
Q
I
G
L
L
H
W
-----
N
D
Y
C
-
H
G
D
L
T
S
SN
I
V
L
V
R
-
D
G
---
A
R
-
W
T
P
H
L
I
----
D
F
G
L
G
S
------
V
-
S
N
L
V
E
D
K
G
V
D
L
Y
V
L
-------
E
R
A
I
L
S
T
H
S
K
-----
H
A
E
-----------------
K
Y
N
A
W
I
M
E
------------
G
F
E
E
V
Y
R
E
Q
G
A
K
G
A
K
K
L
K
E
V
T
K
R
F
E
E
V
R
L
R
GRKR
37
Fugue
67.67
16%
-46
- C3 -
4KXR
-
?
C:
[8-298]
-------T
D
I
T
V
N
V
D
G
F
W
M
L
Q
A
L
L
D
I
R
H
V
A
P
E
L
--
R
C
R
----
P
Y
VH
P
G
M
-
A
--------
V
-
M
R
E
Q
G
----
I
V
V
N
D
A
-------
V
N
E
Q
-----
V
A
A
R
M
K
V
L
A
A
P
D
L
E
V
V
A
L
L
S
----------------
R
GKL---
L
Y
G
V
I
D
D
ENQPPGSR
D
--------
I
P
D
N
-
E
-
F
R
V
-------
V
L
A
R
R
G
Q
H
W
V
S
---
A
V
R
--
V
G
N
D
I
T
V
-----
D
D
V
T
V
S
D
S
A
S
-
I
A
--
A
L
V
--
M
D
G
L
E
S
I
--
H
H
A
D
P
A
A
I
N
A
V
N
-----
V
P
M
E
E
M
L
E
A
T
K
---
S
W
Q
E
-
S
G
FNV
F
S
-
G
G
D
L
R
R
M
GIS
A
A
T
V
A
A
------
L
-
G
Q
A
L
S
D
P
A
A
E
V
A
V
Y
A
R
Q
Y
R
DD
A
K
G
P
S
A
S
V
L
S
-----
L
K
D
G
SG
G
R
I
A
L
Y
Q
Q
ARE
A
W
L
A
I
C
P
A
T
P
Q
------------
L
V
Q
V
G
V
K
T
V
L
D
T
LPYGEWKTHS------------
33
Fugue
61.37
9%
-48
- C4 -
4OK0
-
?
A:
[32-256]
------------------LS
E
Q
A
L
N
H
E
K
L
M
R
A
I
--
V
K
N
----
L
-----
A
-
D
--------
T
P
M
V
L
K
G
E
T
-
A
L
Y
L
G
Y
G
-------
L
-
N
R
-----
F
S
E
D
L
D
F
D
C
H
K
K
I
N
L
L
G
R
V
K
----------------
S
A
IPNG-
I
I
L
N
-----------
D
--------
I
H
I
K
-
K
-
D
T
D
-------
S
V
G
R
Y
M
V
R
Y
A
T
KDN
K
E
E
--
Q
T
L
K
L
E
I
S
YRDA
P
K
------
E
S
-
E
V
--
N
V
I
EG
M
R
I
A
K
I
E
--
R
I
I
D
N
K
L
C
A
C
F
D
GEHTR
T
K
A
R
D
L
F
D
L
H
F
---
L
A
K
H
Y
E
E
---
H
F
-
N
L
D
L
A
S
----
R
L
K
D
F
S
KD
P
D
K
L
V
-
S
D
Y
L
V
D
V
K
L
D
A
L
L
N
-------
Q
I
M
D
L
E
E
T
A
L
-----
E
L
G
-----------------
V
M
A
Q
L
I
H
K
------------
K
L
E
K
L
E
H
H
--------------------------
38
Fugue
58.23
19%
-34
* C5 *
4IAP
5
ENLYS_BPT4 (first)
A:
[5-260]
-------------------------
G
R
Y
L
Q
G
Y
L
--
L
K
K
R
RVD
N
-----
I
-
F
--------
E
-
M
L
R
I
D
E
G
L
R
L
K
I
Y
K
N
-------
T
-
E
G
YYTIG
I
G
H
L
L
T
K
S
P
S
L
N
A
A
K
S
E
L
D
K
A
I
GRNTNGVIT
K
D
E
A
E
K
------
L
F
N
Q
-----------
D
--------
V
D
A
A
-
V
-
R
G
I
L
R
NAKL
K
P
V
Y
D
S
L
D
A
V
R
R
---
A
A
L
--
I
N
M
V
F
Q
M
-----
G
E
------
T
G
-
V
A
G
F
T
N
S
--
L
R
M
L
Q
Q
K
--
R
W
D
E
A
A
V
-
N
L
A
K
-----
S
R
W
Y
N
Q
T
P
N
R
A
---
K
R
V
I
-
T
T
---
F
R
T
G
T
W
D
A
Y
----
V
D
Q
G
F
K
------
K
-
R
F
F
T
L
D
F
R
Y
G
T
L
S
Y
-------
Y
L
N
D
H
N
Q
T
C
R
GEIVI
S
L
S
-----------------
S
V
S
A
N
K
K
D
K
I
I
I
I
D
SGM
E
V
W
V
L
K
A
T
T
K
E
N
W
Q
S
W
V
D
A
L
Q
T
C
F
D------------
20
PsiBlast_PDB
53.75
25%
-32
- C6 -
3OHM
-
PLCB3_HUMAN
B:
[207-280]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
S
L
E
I
F
E
R
F
L
-----
N
K
L
C
L
R
P
D
I
D
K
---
I
L
L
E
-
I
G
---
A
K
-
G
K
P
Y
L
T
----
L
E
Q
L
M
D
------
F
I
N
Q
K
Q
R
D
P
R
L
N
E
V
L
Y
-------
P
P
L
R
P
S
Q
A
R
L
-----
L
I
E
-----------------
K
Y
E
P
N
Q
Q
F
------------
L
E
R
D
Q
M
S
M
--------------------------
17
PsiBlast_PDB
53.17
25%
-36
- C6 -
4QJ3
-
?
B:
[209-282]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
S
L
E
I
F
E
R
F
L
-----
N
K
L
C
L
R
P
D
I
D
K
---
I
L
L
E
-
I
G
---
A
K
-
G
K
P
Y
L
T
----
L
E
Q
L
M
D
------
F
I
N
Q
K
Q
R
D
P
R
L
N
E
V
L
Y
-------
P
P
L
R
P
S
Q
A
R
L
-----
L
I
E
-----------------
K
Y
E
P
N
Q
Q
F
------------
L
E
R
D
Q
M
S
M
--------------------------
19
PsiBlast_PDB
51.88
25%
-35
- C6 -
4QJ5
-
PLCB3_HUMAN
B:
[209-282]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
S
L
E
I
F
E
R
F
L
-----
N
K
L
C
L
R
P
D
I
D
K
---
I
L
L
E
-
I
G
---
A
K
-
G
K
P
Y
L
T
----
L
E
Q
L
M
D
------
F
I
N
Q
K
Q
R
D
P
R
L
N
E
V
L
Y
-------
P
P
L
R
P
S
Q
A
R
L
-----
L
I
E
-----------------
K
Y
E
P
N
Q
Q
F
------------
L
E
R
D
Q
M
S
M
--------------------------
15
PsiBlast_PDB
51.65
25%
-40
- C6 -
4GNK
-
PLCB3_HUMAN
B:
[209-282]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
S
L
E
I
F
E
R
F
L
-----
N
K
L
C
L
R
P
D
I
D
K
---
I
L
L
E
-
I
G
---
A
K
-
G
K
P
Y
L
T
----
L
E
Q
L
M
D
------
F
I
N
Q
K
Q
R
D
P
R
L
N
E
V
L
Y
-------
P
P
L
R
P
S
Q
A
R
L
-----
L
I
E
-----------------
K
Y
E
P
N
Q
Q
F
------------
L
E
R
D
Q
M
S
M
--------------------------
14
PsiBlast_PDB
51.39
31%
-41
- C6 -
3WH4
2
?
A:
[26-70]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
G
--
F
W
F
V
E
Q
L
A
D
K
Y
G
-----
I
T
L
K
N
D
P
K
F
H
G
---
I
S
G
R
-
G
N
---
I
E
-
G
H
D
V
R
L
----
L
L
P
M
T
Y
------
M
-
N
R
S
G
Q
S
V
V
P
F
S
K
F
Y
-------
Q
I
A
P
E
A
I
L
I
A
-----
H
D
E
-----------------
L
D
M
N
P
G
V
I
------------
R
L
K
T
G
G
G
H
--------------------------
12
PsiBlast_PDB
51.26
31%
-40
- C6 -
4LWQ
2
?
A:
[26-70]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
G
--
F
W
F
V
E
Q
L
A
D
K
Y
G
-----
I
T
L
K
N
D
P
K
F
H
G
---
I
S
G
R
-
G
N
---
I
E
-
G
H
D
V
R
L
----
L
L
P
M
T
Y
------
M
-
N
R
S
G
Q
S
V
V
P
F
S
K
F
Y
-------
Q
I
A
P
E
A
I
L
I
A
-----
H
D
E
-----------------
L
D
M
N
P
G
V
I
------------
R
L
K
T
G
G
G
H
--------------------------
13
PsiBlast_PDB
51.10
31%
-44
- C6 -
4LWR
2
?
A:
[26-70]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
G
--
F
W
F
V
E
Q
L
A
D
K
Y
G
-----
I
T
L
K
N
D
P
K
F
H
G
---
I
S
G
R
-
G
N
---
I
E
-
G
H
D
V
R
L
----
L
L
P
M
T
Y
------
M
-
N
R
S
G
Q
S
V
V
P
F
S
K
F
Y
-------
Q
I
A
P
E
A
I
L
I
A
-----
H
D
E
-----------------
L
D
M
N
P
G
V
I
------------
R
L
K
T
G
G
G
H
--------------------------
18
PsiBlast_PDB
51.06
25%
-35
- C6 -
4QJ4
-
PLCB3_HUMAN
B:
[209-282]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
S
L
E
I
F
E
R
F
L
-----
N
K
L
C
L
R
P
D
I
D
K
---
I
L
L
E
-
I
G
---
A
K
-
G
K
P
Y
L
T
----
L
E
Q
L
M
D
------
F
I
N
Q
K
Q
R
D
P
R
L
N
E
V
L
Y
-------
P
P
L
R
P
S
Q
A
R
L
-----
L
I
E
-----------------
K
Y
E
P
N
Q
Q
F
------------
L
E
R
D
Q
M
S
M
--------------------------
35
Fugue
51.05
12%
-5
- C4 -
3J6V
-
?
O:
[54-256]
--------------TQKPVQQSQED
D
P
P
P
S
M
L
L
--
K
D
Y
----
Q
-----
N
-
V
--------
P
-
G
I
E
K
V
D
D
-
V
V
K
R
L
I
S
-------
L
-
E
------
M
A
N
K
K
E
M
L
K
I
K
K
E
Q
L
M
S
K
V
V
----------------
E
NPKDTS
S
L
E
A
-----------
Q
--------
I
V
A
L
-
T
-
V
K
I
-------
R
S
Y
E
E
H
M
Q
K
H
Q
---
K
D
K
--
A
H
K
R
Y
L
L
-----
M
S
------
I
D
-
K
R
--
Q
K
M
--
L
K
N
L
R
K
T
NY
P
V
F
E
K
T
C
K
E
L
-
G
-----
I
E
Y
T
F
P
P
P
Y
H
R
---
K
I
H
--------
R
-
R
L
A
T
K
K
----
A
L
C
I
R
V
------
F
-
Q
E
V
Q
K
L
K
K
Q
K
R
A
L
K
-------
T
A
A
A
A
A
Q
K
Q
G
-----
Q
R
N
-----------------
P
E
S
P
S
E
A
R
------------
S
E
A
I
K
E
T
Q
--------------------------
8
PsiBlast_PDB
50.85
31%
-33
- C6 -
4JX9
-
?
A:
[23-67]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
G
--
F
W
F
V
E
Q
L
A
D
K
Y
G
-----
I
T
L
K
N
D
P
K
F
H
G
---
I
S
G
R
-
G
N
---
I
E
-
G
H
D
V
R
L
----
L
L
P
M
T
Y
------
M
-
N
R
S
G
Q
S
V
V
P
F
S
K
F
Y
-------
Q
I
A
P
E
A
I
L
I
A
-----
H
D
E
-----------------
L
D
M
N
P
G
V
I
------------
R
L
K
T
G
G
G
H
--------------------------
11
PsiBlast_PDB
50.70
31%
-42
- C6 -
4OLJ
1
?
A:
[26-70]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
G
--
F
W
F
V
E
Q
L
A
D
K
Y
G
-----
I
T
L
K
N
D
P
K
F
H
G
---
I
S
G
R
-
G
N
---
I
E
-
G
H
D
V
R
L
----
L
L
P
M
T
Y
------
M
-
N
R
S
G
Q
S
V
V
P
F
S
K
F
Y
-------
Q
I
A
P
E
A
I
L
I
A
-----
H
D
E
-----------------
L
D
M
N
P
G
V
I
------------
R
L
K
T
G
G
G
H
--------------------------
2
PsiBlast_PDB
50.32
31%
-29
- C6 -
4FOP
5
?
A:
[23-67]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
G
--
F
W
F
V
E
Q
L
A
D
K
Y
G
-----
I
T
L
K
N
D
P
K
F
H
G
---
I
S
G
R
-
G
N
---
I
E
-
G
H
D
V
R
L
----
L
L
P
M
T
Y
------
M
-
N
R
S
G
Q
S
V
V
P
F
S
K
F
Y
-------
Q
I
A
P
E
A
I
L
I
A
-----
H
D
E
-----------------
L
D
M
N
P
G
V
I
------------
R
L
K
T
G
G
G
H
--------------------------
7
PsiBlast_PDB
50.29
31%
-39
- C6 -
4JWK
-
?
A:
[23-67]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
G
--
F
W
F
V
E
Q
L
A
D
K
Y
G
-----
I
T
L
K
N
D
P
K
F
H
G
---
I
S
G
R
-
G
N
---
I
E
-
G
H
D
V
R
L
----
L
L
P
M
T
Y
------
M
-
N
R
S
G
Q
S
V
V
P
F
S
K
F
Y
-------
Q
I
A
P
E
A
I
L
I
A
-----
H
D
E
-----------------
L
D
M
N
P
G
V
I
------------
R
L
K
T
G
G
G
H
--------------------------