@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0302: (2015-11-30 )
MSRVCELTNRKKSFGNKVSHSNRKAKRIFLLNLHNVTLISNILNKKFKFRVAIRTLRTIDYKGNLDAFLLNTRTVKLSKKAQKIKRKLKKVLAKQEVELGISDA
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10...-....-----------.20..---......30.........40-.........50........60........70......-..80........90........100..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
S
R
V
C
E
L
T
N
R
K
K
SF-GNKV-----------SHSNR---
K
A
K
R
I
F
L
-
L
NLH
N
V
T
L
I
S
--
N
I
LNK
K
F
K
F
R
V
A
I
R
T
L
R
T
IDYKGNL
D
A
F
L
L
N
T
R
T
V
K
L
-
S
K
K
A
Q
K
I
K
R
K
L
K
K
V
L
A
K
Q
E
V
ELGISDA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
69.87
36%
0
- C- -
4CSU
-
?
0:
[1-71]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
R
V
C
Q
V
T
G
K
R
P
V
T
-
G
N
N
R
-----------
S
H
A
L
N
---
A
T
K
R
R
F
L
-
P
N
L
H
S
H
R
F
W
V
--
E
S
E
K
R
F
V
T
L
R
V
S
A
K
G
M
R
V
I
D
K
K
G
-
I
D
T
V
L
A
E
L
R
A
R
G
E
-
K
Y
G
C
U
G
C
G
G
C
C
G
U
A
G
C
G
C
G
G
U
G
G
U
C
C
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
69.32
36%
3
- C5 -
3J5L
-
RL28_ECOLI
X:
[1-71]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
R
V
C
Q
V
T
G
K
R
P
V
T
-
G
N
N
R
-----------
S
H
A
L
N
---
A
T
K
R
R
F
L
-
P
N
L
H
S
H
R
F
W
V
--
E
S
E
K
R
F
V
T
L
R
V
S
A
K
G
M
R
V
I
D
K
K
G
-
I
D
T
V
L
A
E
L
R
A
R
G
E
-
K
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
68.49
15%
-28
- C3 -
1A9X
-
CARB_ECOLI
A:
[1-127]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPKRTDIK
S
I
L
I
L
G
AG
P
I
V
I
G
Q
A
C
E
F
D
Y
S
G
-
A
Q
A
C
-----------
K
A
L
R
E
---
E
G
Y
R
V
I
N
-
V
N
S
N
P
A
T
I
M
T
DP
E
M
A
D
A
T
Y
I
E
P
I
H
W
E
V
V
R
K
I
I
E
K
E
R
P
D
A
V
L
P
T
M
G
G
Q
T
A
-
L
N
C
A
L
E
L
E
R
Q
--
G
V
L
E
E
F
G
V
T
M
I
G
A
T
A
D
A
I
D
K
A
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
67.28
28%
70
- C4 -
3J7Y
-
?
X:
[74-180]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
Q
R
G
L
W
G
G
E
G
W
I
L
-
G
Q
I
Y
-----------
A
N
N
D
K
LSK
R
L
K
K
V
W
K
-
P
Q
L
F
E
R
E
F
Y
S
--
E
I
L
D
K
K
F
T
V
T
V
T
M
R
T
L
D
L
I
D
E
A
Y
G
L
D
F
Y
I
L
K
A
S
G
E
D
L
C
S
K
F
G
M
D
L
K
R
G
M
L
L
R
L
A
R
Q
D
P
Q
L
H
P
E
D
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
67.23
36%
19
- C5 -
4UY8
-
RL28_ECOLI
X:
[1-71]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
R
V
C
Q
V
T
G
K
R
P
V
T
-
G
N
N
R
-----------
S
H
A
L
N
---
A
T
K
R
R
F
L
-
P
N
L
H
S
H
R
F
W
V
--
E
S
E
K
R
F
V
T
L
R
V
S
A
K
G
M
R
V
I
D
K
K
G
-
I
D
T
V
L
A
E
L
R
A
R
G
E
-
K
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
67.02
36%
19
- C5 -
3J7Z
-
RL28_ECOLI
X:
[2-72]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
R
V
C
Q
V
T
G
K
R
P
V
T
-
G
N
N
R
-----------
S
H
A
L
N
---
A
T
K
R
R
F
L
-
P
N
L
H
S
H
R
F
W
V
--
E
S
E
K
R
F
V
T
L
R
V
S
A
K
G
M
R
V
I
D
K
K
G
-
I
D
T
V
L
A
E
L
R
A
R
G
E
-
K
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
65.51
17%
-2
- C5 -
5A07
3
?
A:
[40-434]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D
H
D
A
E
V
L
D
S
I
M
D
R
L
H
E
P
L
Y
E
K
D
T
F
D
P
N
E
V
-----------
L
A
E
N
K
---
Q
L
Y
E
E
F
L
-
L
Q
E
I
S
E
P
K
V
D
--
N
L
V
R
S
G
D
P
L
------------
A
G
K
A
K
G
T
I
L
S
L
V
R
----
N
S
D
L
E
D
I
I
S
S
I
Q
Q
L
E
E
E
Y
N
K
N
F
G
Y
P
Y
T
F
L
N
DEEFT
D
E
F
K
D
G
I
K
S
I
L
PKD
R
V
V
E
F
G
T
I
GPDNWNMPDSID
R
E
R
Y
D
Q
E
M
D
K
M
S
K
E
NIQYAEV
E
S
Y
H
N
M
C
R
F
Y
S
KEFYHHPLLSKYKYVW
R
L
E
P
N
V
N
F
Y
C
KINYD
V
F
Q
F
M
N
K
N
DKI
Y
G
F
V
L
N
L
Y
D
SPQTIET
L
W
T
S
T
M
D
F
V
E
E
H
PNYLNVNGA
F
A
W
L
K
DNSQN
P
K
N
Y
D
Y
T
QGYSTCHFWTN
F
E
I
V
DLDFLRS
E
P
Y
E
K
Y
M
Q
Y
L
E
E
K
GGFYYERWG
D
A
P
V
R
S
L
A
L
A
L
FADKSSIHWFRDIGYHHTPYTN
C
P
T
C
PADSDRCNGNCVPGKFTPWSDLDNQNC
Q
A
T
W
I
R
HSMS
E
E
E
L
E
MY
15
HHSearch
61.72
28%
-0
- C4 -
2JZ6
-
RL28_THEMA
A:
[6-74]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
K
R
C
E
V
C
G
K
A
P
R
S
-
G
N
T
V
-----------
S
H
S
D
K
---
K
S
E
R
W
F
R
-
P
N
L
Q
K
V
R
V
V
L
--
P
-
D
G
T
I
K
R
M
R
V
C
T
S
C
L
K
S
G
K
V
K
K
Y
V
G
Q
V
S
E
V
G
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
59.96
32%
66
- C4 -
3J7Y
-
?
X:
[98-181]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
---
R
L
K
K
V
W
K
-
P
Q
L
F
E
R
E
F
Y
S
--
E
I
L
D
K
K
F
T
V
T
V
T
M
R
T
L
D
L
I
D
E
A
Y
G
L
D
F
Y
I
L
K
A
S
G
E
D
L
C
S
K
F
G
M
D
L
K
R
G
M
L
L
R
L
A
R
Q
D
P
Q
L
H
P
E
D
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
58.61
27%
23
- C5 -
2B1E
-
EXO70_YEAST
A:
[446-489]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
I
A
L
M
P
N
Q
E
P
D
V
-
A
N
P
N
-----------
S
S
K
N
K
---
H
K
Q
R
I
G
F
-
F
I
L
M
N
L
T
L
V
E
--
Q
I
V
E
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
56.93
27%
75
- C4 -
2JZ6
-
RL28_THEMA
A:
[1-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QGHMI
M
A
K
R
C
E
V
C
G
K
A
P
R
S
-
G
N
T
V
-----------
S
H
S
D
K
---
K
S
E
R
W
F
R
-
P
N
L
Q
K
V
R
V
V
L
--
P
-----------------------------
D
G
T
I
K
R
M
-
R
V
C
T
S
C
L
K
S
G
K
V
K
K
Y
V
G
Q
V
S
E
V
G
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
55.99
14%
-2
- C5 -
5AGA
4
DPOLQ_HUMAN
A:
[3-827]
DKLLLANWGLP
K
A
V
L
E
K
Y
H
SFGVKKMF
E
W
Q
A
E
C
L
L
LGQVLE
G
K
N
L
V
Y
S
A
P
T
SAG
K
T
L
V
A
E
L
L
I
L
K
R
V
L
E
MR
K
K
A
L
F
I
L
PF
V
S
V
A
K
E
K
K
Y
Y
L
Q
S
L
F
Q
EVG
I
K
V
D
G
Y
M
GSTSPSRHFSSLD
I
A
V
C
T
I
E
R
A
N
G
L
I
N
R
L
I
E
E
NKMDLLG
M
V
V
V
D
ELHMLGDSHR
G
Y
L
L
E
L
L
L
T
K
I
C
Y
I
T
R
K
S
A
S
CQADSNA
V
Q
I
V
G
M
S
A
TLPN
L
E
L
V
A
S
W
L
N
A
E
L
Y
H
T
DFRPVPLL
E
S
V
K
V
GN
S
I
Y
D
SSMKLVREFEPM
L
Q
V
K
G
DEDH
V
V
S
L
C
Y
E
T
I
C
D
N
H
S
V
L
L
F
C
PS
K
K
W
C
E
K
L
A
D
I
I
A
R
E
F
Y
N
L
H
H
QASECPPVILE
Q
K
E
L
L
E
V
M
D
Q
L
R
R
LPSGLD
S
V
L
Q
K
TVPWG
V
A
F
H
H
AGLT
F
E
E
R
D
I
I
E
G
A
F
R
Q
GLIR
V
L
A
A
T
STLSSG
V
N
L
P
A
R
R
V
I
I
RTPIFGGRPLD
I
L
T
Y
K
Q
M
V
G
R
AGRKGVDT
V
G
E
S
I
L
I
C
K
NSE
K
S
K
G
I
A
L
L
Q
G
S
L
K
P
VRSCLQRGEEVT
G
S
M
I
R
A
I
L
E
I
I
V
G
GVAST
S
Q
D
M
H
T
Y
A
A
C
T
F
L
A
A
S
MG
A
I
E
A
C
V
M
W
L
L
E
N
EF
I
Q
S
T
EE
G
K
V
Y
H
P
T
H
L
G
S
A
T
L
S
S
SLS
P
A
D
T
L
D
I
F
A
D
L
Q
R
A
M
K
GFVLEND
L
H
I
L
Y
L
V
TPMFEDWTTID
W
Y
R
F
F
C
L
W
E
K
LP
T
S
M
K
R
V
A
E
L
V
G
V
E
E
G
F
-
L
A
R
C
V
K
GKVVARTER
Q
H
R
Q
M
---
A
I
H
K
R
F
F
-
T
S
L
V
L
L
D
L
I
S
--
E
V
P
L
R
E
I
N
Q
K
Y
G
C
N
R
G
Q
I
Q
S
L
Q
Q
S
A
A
V
Y
A
G
M
I
T
V
F
S
N
-
R
L
G
W
H
N
M
E
L
L
L
S
Q
--
F
Q
K
R
L
T
F
G
I
Q
R
E
LCDLVRVSLLN
A
Q
R
A
R
V
L
Y
A
S
GFHT
V
A
D
L
A
R
AN
I
V
E
V
E
V
I
L
K
N
A
VPFKSARKEAVEERRNMRT
I
W
V
T
GRKGLT
E
R
E
A
A
A
L
I
V
E
E
A
R
M
I
L
Q
Q
D
L----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
55.47
37%
-16
- C5 -
3N8H
-
PANC_FRATT
A:
[215-259]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
L
E
E
L
T
N
K
I
N
S
T
-
G
A
K
L
-----------
Q
Y
I
Q
K
---
L
N
N
R
I
F
L
A
F
Y
I
G
K
V
R
L
I
D
--
N
F
L
K
E
T
G
P
S
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
54.49
19%
25
- C5 -
2A3D
-
?
A:
[1-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
S
W
A
E
F
K
Q
R
L
A
A
I
-
K
T
R
L
-----------
Q
A
L
G
G
---
S
E
A
E
-------------------
L
A
A
F
E
K
E
I
A
A
F
E
S
E
L
Q
A
Y
K
G
K
G
-----
N
P
E
V
E
A
L
-
R
K
E
A
A
A
I
R
D
E
L
Q
A
Y
R
H
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
53.52
37%
-8
- C5 -
3QTT
-
PANC_FRATT
A:
[215-259]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
L
E
E
L
T
N
K
I
N
S
T
-
G
A
K
L
-----------
Q
Y
I
Q
K
---
L
N
N
R
I
F
L
A
F
Y
I
G
K
V
R
L
I
D
--
N
F
L
K
E
T
G
P
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
51.81
27%
27
- C5 -
2PFV
-
EXO70_YEAST
A:
[446-489]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
I
A
L
M
P
N
Q
E
P
D
V
-
A
N
P
N
-----------
S
S
K
N
K
---
H
K
Q
R
I
G
F
-
F
I
L
M
N
L
T
L
V
E
--
Q
I
V
E
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
51.33
38%
39
- C4 -
2JZ6
-
RL28_THEMA
A:
[6-44]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
K
R
C
E
V
C
G
K
A
P
R
S
-
G
N
T
V
-----------
S
H
S
D
K
---
K
S
E
R
W
F
R
-
P
N
L
Q
K
V
R
V
V
L
--
P
D
G
T
I
K
R
M
R
V
C
T
S
C
L
K
S
G
K
V
K
K
Y
V
G
Q
V
S
E
V
G
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
49.69
50%
-38
- C5 -
4K5R
-
?
A:
[61-84]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
R
T
V
E
T
L
D
L
R
G
L
L
D
R
F
L
E
G
T
Q
V
A
K
G
-
L
P
F
A
G
I
F
T
Q
G
L
D
F
G
L
V
D
T
R
H
P
Y
T
A
L
V
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
49.33
50%
-31
- C5 -
4K5S
-
?
A:
[61-84]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
R
T
V
E
T
L
D
L
R
G
L
L
D
R
F
L
E
G
T
Q
V
A
K
G
-
L
P
F
A
G
I
F
T
Q
G
L
D
F
G
L
V
D
T
R
H
P
Y
T
A
L
V
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
49.33
50%
-21
- C5 -
3FMW
-
?
A:
[95-118]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
R
T
V
E
T
L
D
L
R
G
L
L
D
R
F
L
E
G
T
Q
V
A
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------