@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0360: (2015-11-30 )
MEKPKVLATKLTESFNVKLANSLDDMRESTDLETKVFDLNSKMKNMLSEYKSKGLNYQDVCILNVADQFRGFKENIKILLKLILKGKLDAHYNPGCSKETLKNYFFFDCFHSTAEPHHKVGNEIYA
Atome Classification :
(20 SA)
----------------------------------------.........10.....-..-.20...---..-...----30........-----40.......-..50-------..--.....-.60-------.-----.....-----------.-..70........80..-------......90....-..---------..100.---....--..110-.-......120....------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------MEKP
K
V
L
A
T
K
LTESFN-
V
K
-
L
A
N
S
L
D
---
D
M
-
R
ES----TDL
E
T
K
V
F
D
L
-----
N
-
S
K
M
K
N
M
L
-
S
E
Y
K
-------SK--GLNYQ-
D
V
--------
C
-----
I
L
N
V
A
-----------
D
-
Q
F
R
G
F
K
E
N
I
K
I
L
L
K
L
I
-------LKGKLDAHYNPG-C
S
---------
K
E
T
L
K
N
---
Y
F
F
F
--
D
C
FHS-T-AE
P
H
H
KVGNEIYA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
79.51
44%
-110
- C3 -
4Q9M
4
ISPT_STRR6
A:
[133-178]
---------------------------------------------------------------------------------------------------------------------------------------
L
-----
I
L
N
F
A
-----------
L
-
N
Y
G
G
R
A
E
-
I
T
Q
A
L
K
L
I
-------
S
Q
D
V
L
D
A
K
I
N
P
G
D
I
T
---------
E
E
L
I
G
N
---
Y
L
F
T
--
Q
H
L
P
K
-
D
-
L
R
D
P
D
L
I
I
R
T
S
G
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
Fugue
79.13
19%
-26
- C2 -
2KPO
-
?
A:
[1-110]
---------------------------------------------
M
L
L
Y
V
L
I
I
S
N
D
-
K
K
-
L
I
E
E
A
R
---
K
M
-
A
E
K
----
A
N
L
E
L
R
T
V
K
T
-----
E
-
D
E
L
K
K
Y
L
-
E
E
F
R
-------
K
E
--
S
Q
N
I
K
-
V
L
--------
I
-----
L
V
S
N
D
-----------
E
-
E
L
D
K
A
K
E
L
A
Q
K
M
E
I
D
V
-------
R
T
R
K
V
T
---
S
P
D
-
E
A
---------
K
R
W
I
K
E
---
F
S
E
E
--
G
G
S
L
E
-
H
-
H
H
H
H
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
78.96
44%
-108
- C3 -
4Q9O
1
ISPT_STRR6
B:
[133-178]
---------------------------------------------------------------------------------------------------------------------------------------
L
-----
I
L
N
F
A
-----------
L
-
N
Y
G
G
R
A
E
-
I
T
Q
A
L
K
L
I
-------
S
Q
D
V
L
D
A
K
I
N
P
G
D
I
T
---------
E
E
L
I
G
N
---
Y
L
F
T
--
Q
H
L
P
K
-
D
-
L
R
D
P
D
L
I
I
R
T
S
G
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
78.88
44%
-103
- C3 -
4Q9O
1
ISPT_STRR6
A:
[133-178]
---------------------------------------------------------------------------------------------------------------------------------------
L
-----
I
L
N
F
A
-----------
L
-
N
Y
G
G
R
A
E
-
I
T
Q
A
L
K
L
I
-------
S
Q
D
V
L
D
A
K
I
N
P
G
D
I
T
---------
E
E
L
I
G
N
---
Y
L
F
T
--
Q
H
L
P
K
-
D
-
L
R
D
P
D
L
I
I
R
T
S
G
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
76.96
44%
-104
- C3 -
4Q9M
4
ISPT_STRR6
B:
[133-178]
---------------------------------------------------------------------------------------------------------------------------------------
L
-----
I
L
N
F
A
-----------
L
-
N
Y
G
G
R
A
E
-
I
T
Q
A
L
K
L
I
-------
S
Q
D
V
L
D
A
K
I
N
P
G
D
I
T
---------
E
E
L
I
G
N
---
Y
L
F
T
--
Q
H
L
P
K
-
D
-
L
R
D
P
D
L
I
I
R
T
S
G
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
75.38
13%
-39
- C2 -
4JQF
-
A:
[1-179]
--------------------AEALSNPGALD
L
P
S
L
T
S
L
L
S
E
K
A
K
E
F
L
M
E
N
R
V
Q
S
F
Y
-
Q
Q
-
E
L
E
M
V
E
---
S
L
-
L
S
L
A
NQP
V
I
H
S
T
T
S
K
A
I
-----
H
-
S
I
F
K
N
A
I
-
Q
L
L
Q
-------
E
K
--
G
L
V
F
Q
-
K
D
DGFD----
N
-----
L
Y
Y
V
T
-----------
R
-
E
D
K
D
L
H
R
K
I
H
R
I
I
Q
Q
---------
D
C
Q
K
P
N
H
M
E
K
G
-
C
H
---------
F
L
H
I
L
A
---
C
A
R
L
--
S
I
R
P
G
L
S
-
E
A
V
L
Q
Q
V
L
E
L
L
E
D
Q
SDIVSTMEHYYTAF---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
64.72
33%
-57
- C3 -
3Q16
-
LDCI_ECOLI
A:
[538-590]
-----------------------------------------------------
S
I
G
-
I
D
-
K
T
K
A
L
S
---
L
L
-
R
A
L
----
T
D
F
K
-
R
A
F
D
L
-----
N
-
L
R
V
K
N
M
L
P
S
L
Y
R
-------
E
D
--
P
E
F
Y
E
-
N
M
--------
R
-----
I
Q
E
L
A
-----------
Q
-
N
I
H
K
L
I
V
H
H
N
L
P
D
L
M
Y
-------
R
A
F
E
V
L
P
T
M
V
M
T
-
P
Y
---------
A
A
F
Q
K
E
---
L
H
G
M
--
T
E
E
V
Y
-
L
-
D
E
M
V
G
R
I
N
A
N
M
I
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
64.52
33%
-56
- C3 -
3N75
1
LDCI_ECOLI
A:
[538-590]
-----------------------------------------------------
S
I
G
-
I
D
-
K
T
K
A
L
S
---
L
L
-
R
A
L
----
T
D
F
K
-
R
A
F
D
L
-----
N
-
L
R
V
K
N
M
L
P
S
L
Y
R
-------
E
D
--
P
E
F
Y
E
-
N
M
--------
R
-----
I
Q
E
L
A
-----------
Q
-
N
I
H
K
L
I
V
H
H
N
L
P
D
L
M
Y
-------
R
A
F
E
V
L
P
T
M
V
M
T
-
P
Y
---------
A
A
F
Q
K
E
---
L
H
G
M
--
T
E
E
V
Y
-
L
-
D
E
M
V
G
R
I
N
A
N
M
I
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
Fugue
63.01
11%
-35
* C4 *
4K0D
8
?
A:
[5-147]
-----------------------------------------
I
A
A
S
A
D
A
Q
L
E
L
I
G
P
R
-
A
A
-
A
A
A
S
L
E
---
S
A
-
V
L
H
----
V
S
L
T
A
R
A
Y
A
L
TPE
P
A
R
M
D
A
L
Q
A
A
L
-
R
R
L
E
-------
G
A
--
A
A
R
F
A
-
A
L
P
K
S
P
E
G
A
A
L
-----
S
G
R
I
L
-----------
A
-
A
V
P
P
F
E
K
A
A
V
A
L
G
T
A
V
-------
A
T
G
G
D
D
S
A
I
R
A
R
-
E
A
T
L
P
P
M
R
E
E
L
L
S
L
L
R
T
---
F
G
A
L
--
Q
Q
A
H
D
-
A
-
G
A
S
H
T
I
L
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
61.47
18%
-33
- C4 -
4WZI
5
PDE4B_HUMAN
A:
[85-576]
VT
P
F
A
Q
V
L
A
S
L
R
S
V
R
N
N
F
T
IQ
K
L
A
M
E
T
L
E
E
L
D
W
A
L
D
Q
L
E
T
I
Q
T
Y
R
S
V
S
E
M
A
S
N
K
F
K
-
R
M
-
L
N
R
E
L
T
---
H
L
-
S
E
M
----
S
R
C
G
N
Q
V
S
E
Y
-----
I
-
S
N
T
F
L
D
K
-
E
N
E
D
-------
H
L
--
A
K
E
L
E
-
D
L
--------
N
KWGLN
I
F
N
V
A
-----------
G
-
Y
S
H
N
--
R
P
L
T
A
I
M
Y
A
I
-------
F
Q
E
R
-
D
L
L
K
T
F
R
-
I
S
---------
S
D
T
F
I
T
---
Y
M
M
T
L
E
D
H
Y
H
S
-
D
-
V
A
Y
H
----
N
S
L
H
A
A
D
V
A
Q
S
T
H
V
L
L
S
TPALDAVFT
D
L
E
I
L
A
A
I
F
A
A
A
I
H
DVDHPGVS
N
Q
F
L
I
N
T
NS
E
L
A
L
M
Y
NDES
V
L
E
N
H
H
L
A
V
G
F
K
L
L
Q
EEHADIFMNLT
K
K
Q
R
Q
T
L
R
K
M
V
I
D
M
V
L
A
T
DMSK
H
M
S
L
L
A
D
L
K
T
M
V
E
T
K
K
V
T
SSG
V
L
L
L
DN
Y
T
D
R
I
Q
V
L
R
N
M
V
H
A
A
D
L
SNPTKS
L
E
L
Y
R
Q
W
T
D
R
I
M
E
E
F
F
Q
Q
G
D
K
E
R
E
R
GMEISPMADKHTAC
V
E
K
S
Q
V
G
F
I
D
Y
I
V
H
P
L
W
E
T
W
A
D
L
V
QPDA
Q
D
I
L
D
T
L
E
D
N
R
N
W
Y
Q
A
M
IP
20
PsiBlast_PDB
60.59
37%
-50
- C3 -
4UX3
-
SMC3_YEAST
A:
[174-216]
----------------------------------------------------
K
S
F
E
-
V
K
-
L
K
A
S
L
K
---
K
M
-
E
E
T
E
Q
K
K
I
Q
I
N
K
E
M
G
E
L
-----
N
-
S
K
L
S
E
M
E
-
Q
E
R
K
-------
E
L
--
E
K
Y
N
E
-
L
E
--------
R
-----
N
R
K
I
Y
-----------
Q
-
F
T
L
Y
D
R
E
L
N
E
V
I
N
Q
M
E
-------
T
S
D
Q
L
L
Q
R
L
N
D
M
-
N
T
---------
E
I
S
G
L
K
---
N
V
N
K
--
R
A
F
E
N
-
F
-
K
K
F
N
E
R
R
K
D
L
A
E
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
Fugue
59.08
18%
22
* C2 *
2LN3
-
?
A:
[1-83]
-------------------------------------------
M
G
L
T
R
T
I
T
S
Q
N
K
E
-
E
L
-
L
E
I
A
L
K
---
F
I
-
S
Q
G
----
L
D
L
E
V
E
F
--------
D
-
S
T
D
D
K
E
I
-
E
E
F
E
-------
R
D
--
M
E
D
L
A
-
K
K
--------
T
-----
G
V
Q
I
Q
-----------
K
-
Q
W
Q
G
N
K
L
R
I
R
L
K
-------------
G
S
L
E
H
H
H
H
H
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
Fugue
56.00
12%
-44
- C2 -
1VDE
-
?
A:
[181-298]
-------------------------------------------
P
I
L
Y
E
N
D
--------
H
-
F
F
D
Y
M
Q
---
K
S
-
K
F
H
----
L
T
I
E
-----
G
-----
P
-
K
V
L
A
Y
L
L
-
G
L
W
I
-------
G
D
--
G
L
S
D
R
-
A
T
--------
F
-----
S
V
D
S
R
-----------
D
---
T
S
L
M
E
R
V
T
E
Y
A
E
K
L
----------
N
L
C
A
E
Y
K
D
R
-
K
E
---------
P
Q
V
A
K
T
---
V
N
L
Y
--
S
---------
K
V
L
N
T
E
N
P
L
W
D
A
I
V
G
L
GFLKD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
52.83
20%
33
- C3 -
3KVN
1
ESTA_PSEAE
X:
[213-313]
---------------------------------------------
P
F
A
S
Q
L
S
G
T
F
N
-
A
E
-
L
T
A
Q
L
S
---
Q
A
---------
G
A
N
V
I
P
L
N
I
-----
P
-
L
L
L
K
E
G
M
-
A
N
P
A
-------
S
F
--
G
L
A
A
D
------------------
Q
N
L
I
-----------
G
T
C
F
S
G
----
N
G
C
T
---
M
-------
N
P
-
T
----
Y
G
I
N
-
G
S
---------
T
P
D
P
S
K
---
L
L
F
N
--
D
S
V
H
P
-
T
-
I
T
G
Q
R
L
I
A
D
Y
T
Y
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
50.88
13%
-27
- C1 -
3IG2
-
SYFB_BACFN
A:
[4-212]
--------------D
K
S
N
K
L
Q
N
L
V
A
E
Q
L
V
G
C
G
F
N
E
I
L
N
N
S
L
T
R
A
A
Y
Y
D
G
L
E
S
Y
P
S
K
N
L
V
M
L
L
N
P
L
S
ADL
N
C
M
R
Q
T
L
L
--
F
G
G
L
E
S
I
A
H
N
-----
D
-
L
K
F
F
E
F
G
-
N
C
Y
H
-------
F
D
--
A
P
Y
S
E
-
D
Y
--------
H
-----
L
G
L
W
V
T
G
K
MVSNSWE
N
T
-
S
V
Y
E
L
K
A
Y
V
E
N
I
F
K
R
L
GLDLHS
L
V
V
G
N
L
S
D
D
I
Y
S
T
-
A
L
---------
T
V
N
T
K
G
GKR
L
A
T
F
--
G
V
V
T
K
-
K
M
L
K
A
F
-
D
V
D
N
E
V
Y
Y
A
D
L
NWKEL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
50.47
32%
-16
- C3 -
2PBI
1
RGS9_MOUSE
A:
[119-176]
-------------------------------------------------------------------------
E
D
----
T
D
Y
A
I
Y
L
A
K
R
-----
N
-
I
K
K
K
G
I
L
-
E
E
Y
E
K
E
N
Y
D
F
L
N
K
--
K
I
N
Y
K
W
D
F
--------
V
-----
I
M
Q
A
K
-----------
E
-
Q
Y
R
T
G
K
E
R
N
K
A
D
R
Y
A
L
-------
D
C
Q
E
K
A
Y
W
L
V
H
R
-
S
P
---------
P
G
M
N
N
V
---
L
D
Y
G
--
L
D
R
V
T
-
N
-
P
N
E
V
K
K
Q
T
V
T
A
V
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
48.30
30%
22
- C3 -
3Q75
2
?
B:
[20-65]
-------------------------------------------------------
N
-
S
R
-
P
S
A
T
L
D
---
E
Q
-
A
E
T
----
E
D
L
I
S
Q
L
F
D
L
-----
T
-
A
D
P
N
A
L
V
-
S
E
H
G
-------
K
R
YS
G
L
R
K
Q
-
E
H
--------
T
-----
Q
F
L
A
S
-----------
S
-
F
F
Q
L
P
G
K
F
V
S
L
D
A
S
R
P
-------
W
L
V
F
W
T
V
H
S
L
D
L
-
L
G
---------
V
A
L
D
Q
G
---
T
K
D
R
--
V
V
S
T
L
-
L
-
H
F
L
S
P
K
G
G
F
G
G
G
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
48.28
30%
19
- C3 -
3Q7F
3
?
B:
[20-65]
-------------------------------------------------------
N
-
S
R
-
P
S
A
T
L
D
---
E
Q
-
A
E
T
----
E
D
L
I
S
Q
L
F
D
L
-----
T
-
A
D
P
N
A
L
V
-
S
E
H
G
-------
K
R
YS
G
L
R
K
Q
-
E
H
--------
T
-----
Q
F
L
A
S
-----------
S
-
F
F
Q
L
P
G
K
F
V
S
L
D
A
S
R
P
-------
W
L
V
F
W
T
V
H
S
L
D
L
-
L
G
---------
V
A
L
D
Q
G
---
T
K
D
R
--
V
V
S
T
L
-
L
-
H
F
L
S
P
K
G
G
F
G
G
G
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
47.86
30%
16
- C3 -
3Q78
2
?
B:
[20-65]
-------------------------------------------------------
N
-
S
R
-
P
S
A
T
L
D
---
E
Q
-
A
E
T
----
E
D
L
I
S
Q
L
F
D
L
-----
T
-
A
D
P
N
A
L
---
E
H
G
-------
K
R
YS
G
L
R
K
Q
-
E
H
--------
T
-----
Q
F
L
A
S
-----------
S
-
F
F
Q
L
P
G
K
F
V
S
L
D
A
S
R
P
-------
W
L
V
F
W
T
V
H
S
L
D
L
-
L
G
---------
V
A
L
D
Q
G
---
T
K
D
R
--
V
V
S
T
L
-
L
-
H
F
L
S
P
K
G
G
F
G
G
G
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
47.74
30%
21
- C3 -
3SFY
2
?
B:
[20-65]
-------------------------------------------------------
N
-
S
R
-
P
S
A
T
L
D
---
E
Q
-
A
E
T
----
E
D
L
I
S
Q
L
F
D
L
-----
T
-
A
D
P
N
A
L
V
-
S
E
H
G
-------
K
R
YS
G
L
R
K
Q
-
E
H
--------
T
-----
Q
F
L
A
S
-----------
Q
-
L
P
G
K
F
V
S
L
D
A
S
R
P
W
L
V
-------
F
W
T
V
H
S
L
D
L
L
G
V
-
A
L
---------
D
Q
G
T
K
D
---
R
V
V
S
--
T
L
L
H
F
-
L
-
S
P
K
G
G
F
G
G
G
P
A
N
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------