@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0510: (2015-12-02 )
MRVIYYTDGNIKLKEGTQHIINFFGVLKCIKVNTFGKGAPKKQESKLVKHYFDYPYFSRIVNPKFFEEELKDKAKNLLQG
Atome Classification :
(14 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10-.......-----..20....-....30........-40.....---...50.-.......60.--.......70........80------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------MRVIYYTDGN--IKLKEGT-----QHIINFFG-VLKCIKVNTFGKGA-PKKQESK---LVKHYF-DYPYFSRIVN--PKFFEEELKDKAKNLLQG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
80.15
30%
-50
* C5 *
2KK4
-
Y2094_ARCFU
A:
[1-95]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------QGHMD
L
I
C
M
Y
V
F
K
G
------
E
E
S
F
-----
G
E
S
I
D
V
Y
G
-
D
Y
L
I
V
K
V
G
T
E
F
L
A
V
-
P
K
K
S
-------
I
K
S
V
E
-
D
----
G
R
I
V
I
--
G
E
F
D
E
E
E
A
R
E
L
G
R
K
W
L
E
E
KSKPVTLEELKSYGFGEEGEGS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
79.01
20%
-52
- C5 -
1GH9
-
PA84_METTH
A:
[1-71]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Y
I
I
F
R
C
D
C
G
R
A
L
Y
S
R
E
G
A
-----
K
T
R
K
C
V
C
G
R
T
V
N
V
K
D
R
R
I
F
G
R
A
D
-
D
F
E
E
A
S
E
---
L
V
R
K
L
Q
-
E
E
K
Y
-----
G
--
S
C
H
F
T
N
P
S
K
R
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
63.28
18%
-1
* C7 *
2YOC
8
PULA_KLEPN
A:
[20-1070]
D
V
V
V
R
L
P
DVAVPGEA
V
T
A
V
E
N
Q
A
V
I
H
L
VD
I
A
G
I
T
SS
S
A
A
D
YSSKNLY
L
W
N
N
ETCDALSAPVADWNDVSTTPSGSDKY
G
P
Y
W
VIPLNKE
S
G
C
I
N
V
I
V
R
DGTDKLID
S
D
L
R
V
A
FGDFTDRT
V
S
V
I
A
GNSAVYDS
R
A
D
A
F
R
A
A
F
GVALAEAHWVDKN
T
L
L
W
PGGQDKP
I
V
R
L
Y
Y
S
H
S
S
K
--
V
A
A
D
G
E
----------------------
G
K
F
T
D
R
Y
-
L
K
L
T
P
T
T
---
V
S
Q
Q
V
S
M
R
F
P
H
L
S
---
S
--
Y
A
A
F
K
L
P
D
N
A
N
V
D
E
L
L
Q
G
E
T
V
A
I
A
A
A
EDGILI
S
A
T
Q
V
Q
T
A
G
V
L
D
D
A
Y
A
E
A
A
E
A
L
S
Y
G
AQLADG
G
V
T
F
R
V
W
A
PTAQ
Q
V
D
V
V
V
Y
S
ADKKVI
G
S
H
P
M
T
R
DSASG
A
W
S
W
Q
G
G
SDLKG
A
F
Y
R
Y
A
M
TVYHPQSRKV
E
Q
Y
E
V
T
D
PYAHSLSTNSE
Y
S
Q
V
V
D
LNDSALKPDGWDNLTMPHAQKT
K
A
D
L
A
K
M
T
I
H
E
S
H
IRDLSAWDQTVPAELRGKYLALTAGDS
N
M
V
Q
H
L
K
T
L
S
A
S
GVT
H
V
E
L
L
P
VFDLATVNEFSDKVADIQQP
F
S
R
L
C
E
V
N
SAVKSSEFAGYCDSGST
V
E
E
V
L
N
Q
L
K
Q
S
DSQDNP
Q
V
Q
A
L
N
T
L
V
A
Q
T
DSYNWGYDPFHYTVPEGSYATDPEGT
T
R
I
K
E
F
R
T
M
I
Q
A
I
K
QDLG
M
N
V
I
M
D
V
V
YNHTNAAGPTDRTS
V
L
D
K
I
VPWYY
Q
R
L
N
ETTGSVESATC
C
S
D
S
A
PEH
R
M
F
A
K
L
I
A
D
S
L
A
V
W
T
TDYKID
G
F
R
F
D
LMGYHP
K
A
Q
I
L
S
A
W
E
R
I
K
A
L
NPD
I
Y
F
F
GEGWDSNQSDRFEIASQINLKGTG
I
G
T
F
S
D
R
L
R
D
S
V
R
GGGPFDSGD
A
L
R
Q
N
QGIGSGAGVLPNELASLS
D
D
Q
V
R
H
L
A
D
L
T
R
L
G
M
A
GNLAD
F
V
M
I
D
KDG
A
A
K
K
GSEIDYNGAPG
G
Y
A
ADPTE
V
V
N
Y
VSKHDNQT
L
W
D
M
I
S
Y
K
ASQEAD
L
A
T
R
V
R
M
Q
A
V
S
L
A
T
V
M
L
GQ
G
I
A
F
D
Q
QGSELLRSKSFTRDSYDSGDWFNRVDYSLQDNNYNVGMPRISDDGSN
Y
E
V
I
T
R
V
K
EM
V
A
T
P
G
E
A
E
L
K
Q
M
T
A
F
Y
Q
E
L
T
E
L
R
K
SSPLFTLGD
G
S
A
V
M
K
R
V
D
F
R
NTGSDQQAG
L
L
V
M
T
V
D
DGMKAGASLDSRLD
G
L
V
V
A
I
NAAP
E
S
R
T
L
NEFAGETLQLS
A
I
Q
Q
T
A
GENSLANG
V
Q
I
A
ADG
T
V
T
L
P
A
W
S
V
A
V
L
E
L
P
Q
G
EAQGAGLPVSS
6
HHSearch
54.03
44%
-31
- C6 -
1P7L
-
METK_ECOLI
A:
[310-335]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
M
V
E
T
F
G
T
E
K
V
P
S
E
Q
L
T
L
---
L
V
R
E
F
F
-
D
L
R
P
Y
G
L
I
Q
M
--
L
D
L
L
H
P
I
Y
K
E
T
A
A
Y
G
H
F
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
48.35
11%
-21
- C5 -
2AXL
-
A:
[1-144]
-------------------------------------------------------------------------------------------------------------------------------------MDDSE
D
T
S
W
D
F
G
P
Q
A
F
K
L
L
S
A
V
D
I
L
GEKFG
I
G
L
P
I
L
F
L
R
G
S
N
S
--
Q
R
L
A
D
Q
Y
-----
R
R
H
S
L
F
-----------
G
T
G
K
D
Q
-
T
E
S
W
W
K
A
---
F
S
R
Q
L
I
-
T
E
G
F
L
V
E
V
S
R
YN
K
F
M
K
I
C
A
L
T
K
K
G
R
N
W
L
H
K
ANT
E
S
Q
S
L
ILQANEELCPKKL
L
L
P
S
SKTVSSGTKEHCYN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
46.72
20%
-75
- C7 -
1QGM
-
GRN1_CYPCA
A:
[1-30]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
H
C
D
A
A
--
T
I
C
P
D
G
T
-----
T
C
S
L
S
P
Y
G
-
V
W
Y
C
S
P
F
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
40.48
31%
13
* C6 *
4NM3
-
B:
[5-23]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
--
P
Q
K
F
A
E
E
L
I
H
R
L
E
A
V
Q
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
37.95
31%
-71
- C6 -
2D58
-
AIF1_HUMAN
A:
[3-21]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Q
E
E
R
L
D
E
I
N
K
Q
F
L
-
D
D
P
K
Y
S
S
D
E
D
--
L
P
S
K
L
E
G
F
K
E
K
Y
M
E
F
D
L
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
35.61
21%
-152
- C4 -
2AUW
2
?
A:
[38-57]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
L
R
K
I
P
D
L
A
P
I
L
D
--
P
E
A
F
A
R
V
H
I
A
E
W
E
G
S
V
E
W
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
30.66
10%
-123
- C3 -
3LWT
-
SAC1_YEAST
X:
[31-65]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
N
Q
D
Q
G
--
V
R
V
L
G
A
E
EFPVQ
G
E
V
V
K
I
A
S
-
L
M
G
F
I
K
L
K
L
N
R
Y
A
I
-
I
A
N
T
V
E
E
---
T
G
R
F
N
G
-
H
V
F
Y
R
V
L
Q
H
S
--
I
V
S
T
K
F
N
S
R
I
D
S
E
E
A
E
Y
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
22.50
11%
-33
- C6 -
2QGU
1
?
A:
[67-93]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
V
P
R
A
-
D
F
K
R
T
T
Q
I
A
M
--
G
R
F
W
S
-
Q
A
T
P
E
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
21.34
43%
50
- C6 -
2LEZ
-
PIPB2_SALTY
A:
[29-42]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
K
T
I
L
-----
E
Y
I
I
N
F
F
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
12.06
17%
134
- C2 -
2KRK
-
A:
[5-16]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
H
H
H
-
S
H
P
N
E
E
A
R
L
D
--
I
L
K
I
H
S
R
K
M
N
L
T
R
G
I
N
L
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
5.71
30%
188
- C1 -
2L9S
-
PHF12_HUMAN
A:
[217-226]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
M
E
R
N
--
P
T
Q
F
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------